Array 1 65745-67398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMRS01000029.1 Pseudomonas aeruginosa strain Ocean-100 scaffold30_cov338_read216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65745 28 100.0 32 ............................ ATCGACCGCAATCGAGGATCACTAAGTCTTCG 65805 28 100.0 32 ............................ ACCGAGGCGGTCTGGCGGACGTTGCGAATCCT 65865 28 100.0 32 ............................ TGGGCAAGGCTGACGCGTGGCGATCGCGTGAT 65925 28 100.0 32 ............................ AAACACATCACCAGTATCTGCCGGAATGTCCA 65985 28 100.0 32 ............................ ATCCGCTGAGCTTCGTCCCAAGCTTGCGAAGC 66045 28 100.0 32 ............................ ACAACGAGGCATGCGCATATGCAGAGCACTTG 66105 28 96.4 32 ..............G............. AACACCATCGGCGACGTGGAGACGTGGAACCC 66165 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 66225 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 66285 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 66345 28 100.0 32 ............................ TCACGAATCACGAGAACGGTCCGATTCCGGGG 66405 28 100.0 32 ............................ GCTGAACAAATTGCCGAGTTCGAAGCAACTCG 66465 28 100.0 32 ............................ TGTTCCGAAGGCGTCAACGAAGGCTAATGACC 66525 28 100.0 32 ............................ TGATAAAACGAGTCAGGAAGGCCCCTGCGGGA 66585 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 66645 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 66705 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 66765 28 100.0 32 ............................ ATGAGTCGCTTGATCCCGTCGCGCATGAATGT 66825 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 66885 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 66945 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 67005 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 67065 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 67125 28 100.0 32 ............................ GTATGCCCGCGAAAGCGGCGCCTGGGCGGAGC 67185 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 67245 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 67305 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [67317] 67371 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77031-75923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMRS01000029.1 Pseudomonas aeruginosa strain Ocean-100 scaffold30_cov338_read216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77030 28 100.0 32 ............................ AAGCCTGCCCCTACGGACTGCACATGCTCTAT 76970 28 100.0 32 ............................ CTTGGTGCAGGCGTCGCGCAGGGCATCAACCA 76910 28 100.0 32 ............................ TGGGAAACGGCAGTGTCGATCTGCGCCGGCGT 76850 28 100.0 32 ............................ TCCCTATGCAGGAAAAGATCAAACGGTTTGTC 76790 28 100.0 32 ............................ AGTCCGGATACTTGGCGCCCACCAGTTCGAGT 76730 28 100.0 32 ............................ TTTGAGCAGTGGGGCGGTGGTCTGTATCGAGG 76670 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 76610 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 76550 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 76490 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 76430 28 100.0 32 ............................ AAGCAGGTGGGCATGTTCACCGCGCCGCAGCC 76370 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 76310 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 76250 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 76190 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 76130 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 76070 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 76010 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75950 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 343124-341298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMRS01000005.1 Pseudomonas aeruginosa strain Ocean-100 scaffold6_cov344_read216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 343123 30 100.0 37 .............................. AGGTTGTTAAAGAGCGGTCGGCTCGGAGGCCTGGGGT 343056 30 100.0 36 .............................. ACCAGCACTCAAGCGCCGCCACCAGTCAGGGCAGGT 342990 30 100.0 36 .............................. AATTCACGGAACGCCAGAGCAGGTAACCAAGGACGT 342924 30 100.0 36 .............................. ATCCGCACCCACCGGAAAGCCCTGGTTCGCCGGTGT 342858 30 100.0 37 .............................. CGTGTCGGCAGTGTCGCCGCCCCGGCGCCCTAATAGT 342791 30 100.0 36 .............................. CTCTCCGCTCAGTCCTGTAGAAATTTTGACCAAGGT 342725 30 100.0 36 .............................. CTCTGCTACATCGCGAAGGAGCGAGGCTATACCGGT 342659 30 100.0 36 .............................. CTCACCCAGCAAGCAATCGCCGCCCATCCCCGCCGT 342593 30 100.0 38 .............................. CGCTACCAGGCCTTTGCTGATCGCTGGAAGGCGCAAGT 342525 30 100.0 36 .............................. ACCGCGATCTGGGATGACCTCACCGTGCCGACCAGT 342459 30 100.0 38 .............................. CTCCAAGGAGAATCGCAATGAGCGACTTCGAAAAACGT 342391 30 100.0 37 .............................. TCCTACGACAGTTTCGGCGGTTACATCTGGGACGCGT 342324 30 100.0 38 .............................. CACTACTGCGGCCGCGACCAGGTGGCAAAGACCAACGT 342256 30 100.0 38 .............................. TCGGTTGATAGTTGCCGGGGATGCGCCGGCATCCAAGT 342188 30 100.0 36 .............................. GCAAAGCAGGCCGAGCAGGCCGAGGCGGAGCGGCGT 342122 30 100.0 37 .............................. TACGACGCCATTCCACTTTCCGGATGCTGCTGTATGT 342055 30 100.0 35 .............................. TCCGTCGAGTCGTTCAGCACGACGAAGAAGCCTGT 341990 30 100.0 37 .............................. GCAGATCATGGAAGGTTATCGCCAGCGCCCACTCGGT 341923 30 100.0 36 .............................. GCTTGCTTATCGGGCAGGAGAGCCGTGGTGATCCGT 341857 30 100.0 36 .............................. TTCGGTACGCAACTGATCCAACCGGTTGCACGACGT 341791 30 100.0 36 .............................. GGGCGCACGTCGAGGACGCCTTCGCGAAGGTCAAGT 341725 30 100.0 35 .............................. AGTGTCATCATCGTGCGAAAAGCACTTAAGTAAGT 341660 30 100.0 37 .............................. TCGATCAGCGTTGCTTCGAATGCGCGGAACCAGATGT 341593 30 96.7 35 ..................C........... GGGTGGCCGTGATGGCTATCGAGATCAACCGCCGT 341528 30 100.0 37 .............................. GCGGCGTGAGCGTAACGGGTAGTGGTGGCCACCGCGT 341461 30 100.0 38 .............................. CGATGGTACGTATCGGCAAGCTTCAGCAGTTCCAGCGT 341393 30 100.0 36 .............................. TTCGGTCGGCAGATCAACTTCGAAACGCCGTACAGT 341327 30 93.3 0 .......................G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.6 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGGAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGTGGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGGCTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //