Array 1 453698-455190 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKP01000001.1 Salmonella sp. S100_03632 NODE_1_length_579364_cov_192.513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453698 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453759 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453820 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 453881 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 453942 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454003 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454064 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454125 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454186 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454247 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454308 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454369 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454430 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454491 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454552 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454613 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454675 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454736 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 454797 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 454858 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 454919 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 454980 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455041 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455102 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455163 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471322-473225 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKP01000001.1 Salmonella sp. S100_03632 NODE_1_length_579364_cov_192.513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471322 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471383 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471444 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471505 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471566 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471627 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471688 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 471750 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 471811 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 471872 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 471933 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 471994 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472055 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472116 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472177 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472238 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472299 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472360 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472421 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472482 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472544 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 472647 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472708 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 472769 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 472830 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 472891 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 472952 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473013 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473074 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473135 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473196 29 96.6 0 A............................ | A [473222] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //