Array 1 12340-11711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000101.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_82_length_12463_cov_27.7261_ID_163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12339 28 100.0 32 ............................ AGGGTCGCAAACGGACGGTTTCTGTAACTATC 12279 28 100.0 32 ............................ AGTCCGGACGCTGGGCGATTTTCCGGACTGGT 12219 28 100.0 32 ............................ CGGAAAATCGCCCCGCGCCGGGCGAGCATTTA 12159 28 100.0 32 ............................ TCCGGTCATAGGGTAGGGGGAAGCTTTTCTCC 12099 28 100.0 32 ............................ TGCTGGCGAAGCTGGATCGACCGGTACTGACT 12039 28 100.0 32 ............................ CTGCTGATCGAGGCGGCCAAGCGCGCCGGCAG 11979 28 100.0 33 ............................ TGGATAAACCCGCAGTTGGCCACCTGCCGGAAT 11918 28 100.0 32 ............................ TAGCGATTAAGCCGGCTGGCCCTTGGGGGCAA 11858 28 100.0 32 ............................ TACTACCGGAACACGCAGTCCGGAACGCTGAT 11798 28 100.0 32 ............................ ACGGGGAGCCGGCATGAAGCTGATCGACAACT 11738 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGGCTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-497 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000066.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_18_length_110797_cov_43.7352_ID_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ TGAAAACCCAAGCCAAAGTGGCAATTCGGGGC 110 28 100.0 32 ............................ TGACCGAGAGCTCCAATCTCACCCCGAACCCG 170 28 100.0 32 ............................ TTGTGGAACTGTGGTATCGCCGCTGGGTGCAG 230 28 100.0 32 ............................ AAGCAAGGACGTGCAGCATCTCATCGACGCTG 290 28 100.0 32 ............................ AATCTCACACCGAACCCGTCGGCAACTACGTT 350 28 100.0 32 ............................ AGCCGCGGCTGGTGGGACGGGTCCAGGTCCAG 410 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 470 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : ATCGCAAGCGATATCGACCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATATCCCGGATACGCGGCGGATAACCGCAAGCGGTTATCCGCCCTACGGAACCGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGCAGTCATGCTCACTCGCCAAGTGGTGGGGCGGCGAACCCGCCCCGTCAGGTGGCCGAGCGGAATCGTTGCGCAGGGGGACGAGCGGCAGGAAGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCACCGGGAGCAACGATGTAGCGAGGGCACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGACGAAACAAGAAGTCGAGGCAGGTACAGCAACCAGCTAGACCACCAAATCTGAAGCCCGCTCAGGCTCTAAGCGACATCCTCCCCCAAGTTGCCAACTGCCGTGTAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 81275-81723 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000030.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_32_length_82955_cov_36.8411_ID_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81275 28 100.0 33 ............................ AGGCGCTGGACTCGCCCCCTGGGCGGCTTCGCT 81336 28 100.0 32 ............................ TTCGACTCATCACCCACACCGCCCGTTTCGGA 81396 28 100.0 32 ............................ GGCAAGCGTGTTCTTCAGGTCCTGAATCTTCT 81456 28 100.0 32 ............................ TGGGAGATTCTGCGCCGAGGCGGCAACCGCCT 81516 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 81576 28 100.0 32 ............................ TCGTATTCCCCGCCGGCTACACTTTCCCATGC 81636 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 81696 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGGTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-258 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000087.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_60_length_29755_cov_46.0854_ID_119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ ACCAGGGCATCCCACATCGAGCGATTGATTGA 110 28 100.0 32 ............................ AGAGGGGCAGCGCCCCTTTGGGCAAGGGCGAA 170 28 100.0 32 ............................ ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 230 28 82.1 0 ......................G.CTTC | C [249] ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 125-812 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000032.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_51_length_48186_cov_29.1143_ID_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125 28 100.0 32 ............................ ACCAGGCGACCGGATAGGAGCCATCGCACGAA 185 28 100.0 32 ............................ ATTCGAACCTGCTGCGTCTTGGTCAACGGCGT 245 28 100.0 32 ............................ TGGCCGGGATGTAGGGATCAGGATCTACCGAC 305 28 100.0 32 ............................ ATGATCGAACTGCACCACGCGCCTTTGAGCAG 365 28 100.0 32 ............................ AGAAGGTCGTGCTTGTTCGGGCTGGAGTGATT 425 28 100.0 32 ............................ TGGGAAGATGCAGACCCCGACAGCCTGACTGA 485 28 100.0 32 ............................ ACCATATGGCGGCGTGCGGAGTTTCATGCATT 545 28 100.0 32 ............................ AGCGGCAAAGGCTCCCCGCTCGCCGACTCGCC 605 28 100.0 32 ............................ ACGAGGCATGGTTGAATCGCCCACAGGGCGGC 665 28 100.0 32 ............................ TTCCATCAGCGCTTGTCGACGAGTTCCACCGC 725 28 100.0 32 ............................ TGCGCCCTGCTTTCGGTAGGAAAATCAGGCAG 785 28 96.4 0 .........T.................. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGAGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10721-9733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXO01000032.1 Pseudomonas aeruginosa strain ENV-454 PA4_H2_NODE_51_length_48186_cov_29.1143_ID_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10720 28 100.0 32 ............................ TGACATGACAGCCAGCCAATTAAACCCCGAGC 10660 28 100.0 32 ............................ ACAAAAAAGCCGCCGAAGATCAGGACTTGGGC 10600 28 100.0 32 ............................ TGAAACCAGTCGAAGTCACCAGTCAGAACCTC 10540 28 100.0 32 ............................ ACGAAGGAAATCGCTGGATGATCGATGGCCCA 10480 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 10420 28 100.0 32 ............................ AAATGCCCAGACTGCGGCAAAGGCGATCTGAT 10360 28 100.0 32 ............................ GTCTGAGTACTGCCGAACCAGGGGAACGAGAA 10300 28 100.0 32 ............................ AGAAACGGGGGCACCGCTGGTGGTATTGAGCG 10240 28 100.0 32 ............................ ATCATCGACACAGCGGGCCACGGCCATGACTA 10180 28 100.0 32 ............................ GAGCTGCTCGGCGACATGAAAGCGGTCCGCGC 10120 28 100.0 32 ............................ TGTGCGGCTACCGCGGCCCCATCGAACGGCTG 10060 28 100.0 32 ............................ TAAATTGCCCGAGTCCGCCGAACAACTCTGGC 10000 28 100.0 32 ............................ TTCCACGGCTCCTTCGAGGACGCGGTATCCGA 9940 28 100.0 32 ............................ AGCGTGACGCAGCCGTGCCCGGCCTGCTCGCA 9880 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 9820 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 9760 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGTCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //