Array 1 1-1590 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGG01000072.1 Yersinia pseudotuberculosis strain 18-YE00013 NODE_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 61 28 100.0 32 ............................ ATGCCAGTTATTATAGTCTACCCTGTTACATT 121 28 100.0 32 ............................ CAGCAAATTCAATCGAACGATGGAGTGCGGCA 181 28 100.0 32 ............................ ACTGTGAAAGATGTTCTAATATAGATTGCGAT 241 28 100.0 33 ............................ AAGTACCACCAATAGACTCCCAATACTCACCTA 302 28 100.0 32 ............................ TCTTTAAATGTGAAACCACGAACAAATAAAGT 362 28 100.0 32 ............................ TTAAGTACCTAGGCATTAAAGTAATTAATTCA 422 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 482 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTATTAACA 542 28 100.0 32 ............................ ATATCTCATGCCAACACGTTGGATGAATCACA 602 28 100.0 32 ............................ ATATAGCGAGTTTAAAAAGAGTTTACCTAACG 662 28 100.0 32 ............................ ATAAGATAAATTATTGCTATATCTATCTGAGC 722 28 100.0 32 ............................ CCAAGCAATATTAATAATATACATAACTCCGG 782 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 842 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 902 28 100.0 32 ............................ CTTATTCCCCCATTTACCCAAATCTGAATCGT 962 28 100.0 32 ............................ GCATTCAAACGAGTATCGTGGCGGCAACACAA 1022 28 100.0 32 ............................ CATCTTTGAAAGATTCATTGAGTGATACAAAA 1082 28 100.0 32 ............................ TCAATGGTAAGTCCGAAGATAGCATGGGAAGA 1142 28 100.0 33 ............................ CCTGCCCACCCATCACTCCGGCGCTACAGGCCA 1203 28 100.0 32 ............................ TGCAATTCCGGATCATATTGCTGCGTTGATAT 1263 28 100.0 32 ............................ TAATGCCTTAAACGGATTGCCGGATAAAAAGG 1323 28 100.0 32 ............................ AACATTATCGATGGCAAGTTTTCTCGCTCATC 1383 28 100.0 32 ............................ ACTATTCACAGCCGCCAAGCCAGCGGAGGATT 1443 28 100.0 32 ............................ AAAGAATACACCCGGAACGCCATCTGGTGATT 1503 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 1563 27 89.3 0 .....................CC.-... | T [1589] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 177061-174451 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGG01000002.1 Yersinia pseudotuberculosis strain 18-YE00013 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177060 28 100.0 32 ............................ ATTTCCAGACATTGGGATAAAATAACATTTCT 177000 28 100.0 32 ............................ ATCATATGACTTAAACTTAGCCATAGCTGCAT 176940 28 100.0 32 ............................ AATGGGATCACCTTGCTATATTGCCGCCAAGC 176880 28 100.0 32 ............................ AATTGAACGCGCTAATGCTTATCTTAGACTGA 176820 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 176760 28 100.0 32 ............................ CATATCGCGCATGTGTTTACGCAATTTATCAG 176700 28 100.0 32 ............................ ACTCGTCATCAAAACTGCAAACAGTACGATTA 176640 28 100.0 32 ............................ AAATAGACAACTACGCAGCAGTGCTAGACCGC 176580 28 100.0 32 ............................ AAGTCCGCCATTGCTAAAGGCTGAACCAATAA 176520 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 176460 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCTGCTCCT 176400 28 100.0 32 ............................ ACTGAATTACGTCAATTCTAACAACAAGAAAT 176340 28 100.0 32 ............................ TATTTAACCTTAACCTACGCGAAGTTTAGTTT 176280 28 100.0 32 ............................ ATTGTGTTGAATAGAAAAATGGTTTCCATCTC 176220 28 100.0 32 ............................ AAGTACCACCAATAGACTCCCAATACTCACCT 176160 28 100.0 32 ............................ AAAGCAGCGCAAGTTAATAGCGATGAAGTTAA 176100 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 176040 28 100.0 32 ............................ ATAAGTATAACACTATAATTAATAATTGATGT 175980 28 100.0 32 ............................ GTCATGATAAACTTGGATATTTCTATAAATAT 175920 28 100.0 32 ............................ TTTACCATATGAAAAACGTTTTACAAGTGAAA 175860 28 100.0 32 ............................ CAAGTTTTAATAGAGTGGAGGAATACATTCAT 175800 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTTTACTAACA 175740 28 100.0 33 ............................ CCATGTCAGTAATACCTTTTAAGTTATCAATAC 175679 28 100.0 33 ............................ CTTATTTTAACACGTCACATAATGCACAGGATT 175618 28 100.0 32 ............................ TTATAGTTAATTTAAATTGAGTTTTATTATAT 175558 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 175498 28 100.0 32 ............................ ATTTAAAACGTGAGCAATAGATATGCATAACC 175438 28 100.0 32 ............................ AATGCGTCTATTCTTGAATATCTAAATACATC 175378 28 100.0 32 ............................ TAACGCTTTAATAACACTATCATCGTTAGATT 175318 28 100.0 32 ............................ TAATATATCAATTTCAGAGTGTCGAGTACAGA 175258 28 100.0 32 ............................ AGTTGCAGCGAATACTTGACCAGATGTTGCTA 175198 28 100.0 32 ............................ CCGCCGCACACCCCGCACATCGGCGATCCGTT 175138 28 100.0 32 ............................ AATAGCCTGAAAGCGCTTTGCTATAGCACCCA 175078 28 100.0 32 ............................ AGCTGCTCAACTTGGTTGATTTCGCAGCGCAG 175018 28 100.0 32 ............................ AAGCAATATATGCGTCCGGACATCAAAGCATG 174958 28 100.0 32 ............................ CAGATGGCATGAAATTAAAGGCTCATGATACA 174898 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 174838 28 100.0 32 ............................ AGTACCACCAATAGACTCCCAATATTCACCTA 174778 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 174718 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 174658 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 174598 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 174538 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 174478 27 85.7 0 ...................A-.A.T... | C [174454] ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGGCCATGTGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGTGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTGACTCAACTACTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTCTGGAATAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15899-17188 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGG01000064.1 Yersinia pseudotuberculosis strain 18-YE00013 NODE_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15899 28 100.0 32 ............................ TTTCTATAACTTGTGCATGCATCCATCTATCA 15959 28 100.0 32 ............................ ATAATAGATGCAGAGCTACCGACAGCGGGCCA 16019 28 100.0 33 ............................ GTGAATATCGAGCGTCAGGGTAACGCTACTCGC 16080 28 100.0 32 ............................ GAGAAGATTAGTCTCCACTCTATCAACTTGAT 16140 28 100.0 32 ............................ AACACCAAGGGATTATTACCAGACACAGGCGA 16200 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 16260 28 100.0 32 ............................ ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 16320 28 100.0 32 ............................ ATATCAATTTCAAAGTGTTGAATATAGAGAAA 16380 28 100.0 32 ............................ TAAAACGTTTCTAGAAGCCCAAGAAGCGCCAG 16440 28 100.0 34 ............................ GTTGGCCTGCTGTAGGTTCGTCTGCGTCTGTTAT 16502 28 100.0 32 ............................ TATTACATATAATTTCTCTATACTCTTTATAC 16562 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 16622 28 100.0 32 ............................ ATACTACATTTATTTCCATATTAAACCACACG 16682 28 100.0 31 ............................ CCCATTAATAGAGGTATAAAAGGAATCATAT 16741 28 100.0 32 ............................ AACAACTCTAACACGTAGATAGTCTAAAGTTT 16801 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 16861 28 100.0 32 ............................ ACATACTGCTTAACTTGGTTCCATAGACCGTT 16921 28 100.0 32 ............................ CTTGATTAAAAGCTTCTTCTTCTTTAATAGCA 16981 28 100.0 32 ............................ CTACTCCGAAACTACGGAGTGTGATTACATTT 17041 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 17101 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 17161 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : GATTTAGAAGCTACCGTGTTAGCTAATCACGCGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //