Array 1 95942-97373 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJI01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2012CEB432SAL scaffold_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95942 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96003 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96064 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96125 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 96186 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 96247 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96308 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96369 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96430 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96491 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96552 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96613 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96674 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96735 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96796 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96857 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 96919 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96980 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 97041 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 97102 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 97163 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97224 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97285 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97346 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8701-10665 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJI01000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2012CEB432SAL scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8701 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8762 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8823 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8884 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 8945 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9006 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9067 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9129 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9190 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9251 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9312 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9373 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9434 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9495 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9556 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9617 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9678 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9739 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9800 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9861 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9922 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9984 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 10045 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [10087] 10087 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10148 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10209 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10270 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10331 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10392 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10453 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10514 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10575 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10636 29 96.6 0 A............................ | A [10662] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //