Array 1 148-1274 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETV01000231.1 Escherichia coli strain KCJK8666 NODE_231_length_1414_cov_2.898213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 209 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 270 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 331 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 392 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 453 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 514 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 575 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 636 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 697 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 758 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 819 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 880 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 941 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1002 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 1063 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1124 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1185 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1246 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8415-8993 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETV01000007.1 Escherichia coli strain KCJK8666 NODE_7_length_71682_cov_3.898693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8415 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8476 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8537 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8598 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 8659 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 8720 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 8782 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8843 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8904 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 8965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //