Array 1 58-758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPB010000205.1 Escherichia coli strain PE01_349 .PE01_349.206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58 29 100.0 32 ............................. ATTCCATTTTTATTTCCTGATTAATATACGTG 119 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 180 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 241 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 303 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTAGTATCGCC 364 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 425 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 486 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 547 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 608 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 669 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 730 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTG # Right flank : GCAATTTGTTGTCCGCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104010-103554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPB010000003.1 Escherichia coli strain PE01_349 .PE01_349.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104009 29 100.0 32 ............................. GCCATGGGCCTGAACGGCGATCTGATTACGTG 103948 29 100.0 32 ............................. ATCTCTATGTCAAAAGATGAAATTCAGCAAAT 103887 29 100.0 32 ............................. GAAAAAGAGCCCGGACACACTGGCTGGAGCTT 103826 29 100.0 32 ............................. ACATATAATGGCACTTATATTTCCTTAGAGTG 103765 29 100.0 32 ............................. CAACGCGGTCAGCCGAAATATGACGCGCCGGT 103704 29 100.0 32 ............................. AATCAAACTATTCATGTAGCCGGTATCGCAGA 103643 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 103582 29 72.4 0 A.........TT...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTATTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATATCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGGAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTGGCAGCATGAAATATATGAGCTGGTGAGTTATAAAGATTATCTATACTCAACAGACCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAACAAATTAGAACAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCCGTAGGTAATTAATAAATATTGTCTTTATGGTGGGAAAACGCAATTTTTCATATTATAAATATGAGATTAAAACAATAAGTTAATATTATGCTTTTATTTTAATCTCGAAAATGCCTAATTTCATTAAATACGTTCTTCTGTAAAGGCAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //