Array 1 2099382-2101105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025828.1 Akkermansia muciniphila strain EB-AMDK-13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2099382 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 2099447 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 2099512 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 2099577 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 2099642 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 2099706 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 2099770 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 2099835 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 2099900 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 2099966 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 2100031 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 2100098 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 2100164 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 2100228 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 2100293 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 2100358 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 2100423 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 2100488 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 2100554 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 2100619 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 2100684 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 2100749 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 2100813 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 2100879 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 2100944 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 2101010 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 2101075 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2593013-2588967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025828.1 Akkermansia muciniphila strain EB-AMDK-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2593012 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 2592946 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 2592879 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 2592812 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 2592745 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 2592678 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 2592611 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 2592545 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 2592478 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 2592411 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 2592344 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 2592277 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 2592210 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 2592144 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 2592077 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 2592009 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 2591941 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 2591874 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 2591808 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 2591742 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 2591675 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 2591608 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 2591541 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 2591475 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591408 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591341 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 2591274 33 100.0 34 ................................. ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC 2591207 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 2591140 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 2591074 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 2591008 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 2590941 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 2590874 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 2590807 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 2590741 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 2590674 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 2590607 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 2590540 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 2590474 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 2590408 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 2590341 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 2590274 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 2590207 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 2590140 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 2590073 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 2590006 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 2589939 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 2589872 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 2589805 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 2589738 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 2589671 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 2589604 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 2589537 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 2589470 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 2589403 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 2589336 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2589269 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2589201 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2589135 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2589068 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2589045] 2588999 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //