Array 1 451-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLCU01000042.1 Acinetobacter baumannii strain ABBL014 contig-1000054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 450 30 100.0 30 .............................. ACGAGTATTTCCGCAAACTGGTGTCTCTAA 390 30 93.3 30 ............................GT TTTAATAAATCATTATCGAATTGGAACGTG 330 30 96.7 30 ............................C. TTGCTTGTGTAGATTGAACAGCAATCCATG 270 30 100.0 30 .............................. TGCACCCCATCCCAAGTAAAGAGATTGTAG 210 30 96.7 30 .............................T TGTGAATCTAAATAAGCTATACGTGCAGCG 150 30 96.7 30 .............................C TCATGATTTTAGAGCTACAGCTTCTACCCT 90 30 100.0 30 .............................. TCGATCGGGAACGGGAAAAAGTGGAGCAAG 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 8 30 97.9 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : A # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4-1714 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLCU01000061.1 Acinetobacter baumannii strain ABBL014 contig-16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4 30 100.0 30 .............................. CATCCTATAACGATGAAGTTGCTGGAATAA 64 30 100.0 30 .............................. CTATTGGCAATGGCACCACATTCTACCCAG 124 30 93.3 30 ............................GG CTCCAGTTCCTCTCACTAAATCAGCAGGCT 184 30 93.3 30 ............................TG AATTGATGGCCAACCATGAGAAAGGCAAAC 244 30 93.3 30 ............................GT TTCGTGGTGCCATCCTGATTTCTCAAAACA 304 30 93.3 30 ............................TG AGACAGAAGCCAAAGGCCTGTTTTCTAAAG 364 30 93.3 30 ............................CT GCTATTTTCAGTAAGAAAAATGATGGCATG 424 30 93.3 30 ............................TT CACGTGGTACGCGCTGTAAGCCTGTTTGTT 484 30 96.7 30 .............................C TAACTGAACGTGTCCTCGTGAAAAGGTTGT 544 30 100.0 30 .............................. CTAATGACGATTGTGTTGCTGAATTAAACA 604 30 96.7 30 .............................C TGATAGATTGAATGTACTCCAAAACATCCA 664 30 96.7 30 ............................G. TACGAAATCGCAACAAACGGTTTTTCAAAA 724 30 96.7 30 ............................T. AAAAAATCTGTAATGAAGCACTTAAAGGTT 784 30 93.3 31 ............................CG AATCAATTGATTTTTCAATCCAATCTAATTT 845 30 93.3 30 ............................GC ACCTGTGGCATAGCATTATTTACCTGAGCA 905 30 96.7 30 ............................C. TCTGTTGATATTGCTGGGCAGTACACGCAC 965 30 93.3 30 ............................TG CAAAGTCCACATTATATAGAACATCCAAAC 1025 30 96.7 30 .............................G TTCATCCAGTCGTTCACGCAAGGTCATAGT 1085 30 93.3 30 ............................GT TCTGAGCATTGAATAAATAAGCGTTTTGAT 1145 30 93.3 30 ............................TT GTTGGCTTGGGTAATGTAGTCTCGTTGAGC 1205 30 93.3 30 ............................TG TTTGCTGAAAATCGCCTATACGATCCTGCA 1265 30 96.7 30 .............................G ATGGAACAAGCAACATTGCTCAATTGGGCT 1325 30 96.7 30 .............................T TAGGTTGCCTTCCTTAAGAATAATTTTCCT 1385 30 96.7 30 .............................G CAAACAATGGATCTGCAATATCAATAACTC 1445 30 96.7 30 .............................T TATGGAGCCACCGTGCGTTTAGTTGGAGTT 1505 30 100.0 30 .............................. CGTGAACAATTGTTTTAGCTTTGAACATTA 1565 30 86.7 30 .............C...T..........GT TACTGGGTTGCGGAATATATTCGCAATTAT 1625 30 83.3 30 A.....AA.........T...........T TTTGATCTTTACTTATTCTCGCTTCAAACA 1685 30 66.7 0 .......A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 29 30 93.9 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : AGCG # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //