Array 1 108081-107901 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808410.1 Rothia sp. HMSC065B04 Scaffold168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 108080 36 100.0 35 .................................... GAAAATGTTGTTAAGCCCGTCTTTGAATGGATTGT 108009 36 100.0 37 .................................... TTCCCCGGTGAGCACGGCGGCACCCCCTGGCCCGGCG 107936 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGC # Left flank : TTCCACATGAGCAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCGTGCGGTGCTAGTTCTTGTGGGCGTATGCGTCGCCGTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCGTTGACGTGAACACTTTGAGCGGCGATTTGGCGATGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCAGGTAGAGTTACCGAAAGCGACTAGGGATATAACGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCAGGGTAAGAAATCAACCTCTTCCCCCTTTGAAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGCTTGATCGCGCTCACGCTCAGGGGTACGAGGTGACAA # Right flank : GATTTTATGGCGGGCTTCCTCCCAAAATGGTGAGGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCCTTCCTTTTTGGAGGGGCTTTCATTGAGGCATCAACAGAATGGGCGTGGCGATGGAAACAAAAATATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCTCTGCGACAGTGGCGGCATATCTGAGGTCTCTATCTGGGATTTCCATTCCTTGTTGGAGGGACTTTCATTGAGGTGCCTTGGCGTGGTCATCAATCCCAGCGCGCAGATGCTCATTTCCCTTCCTAACCGGAGGGGCTTTCATTGAGGCCGCGCTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 108312-108637 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808410.1 Rothia sp. HMSC065B04 Scaffold168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 108312 33 100.0 40 ................................. AATCCCGTTATATCCCTAGTCGCTTTCGGTAACTCTACCT 108385 33 100.0 41 ................................. AATCCCATCGCCAAATCGCCGCTCAAAGTGTTCACGTCAAC 108459 33 100.0 40 ................................. AATACGGCGACGCATACGCCCACAAGAACTAGCACCGCAC 108532 33 100.0 40 ................................. AATTGCTCATGTGGAATGGTATGTGATTTTCTTACGTGTT 108605 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ========================================= ================== 5 33 100.0 40 GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGA # Left flank : NNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCCCTCACCATTTTGGGAGGAAGCCCGCCATAAAATCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGCCGGGCCAGGGGGTGCCGCCGTGCTCACCGGGGAAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATACAATCCATTCAAAGACGGGCTTAACAACATTTTCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGTCACCTCGTACCCCTGAGCGTGAGCGCGATCAAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTTCAAAGGGGGAAGAGGTTGATTTCTTACCCT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTCCGGTACATGCCAGTTGAACACCTCAGCGTGAGCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATATCCGCAAAGACCATGAATGGCAACCCCCAAGTTTGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCATGGGATTCTTCGACAGCCTTGTTCAGAGCCTCAAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGATCAGGCAGGTTTCACCCCCGGGACCGATGCCTGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCATAGATTACGCATTACCGCATAACGACGAATGGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCCCAGCGAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 108804-109415 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808410.1 Rothia sp. HMSC065B04 Scaffold168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 108804 36 100.0 36 .................................... ATCCGCAAAGACCATGAATGGCAACCCCCAAGTTTG 108876 36 100.0 36 .................................... CATGGGATTCTTCGACAGCCTTGTTCAGAGCCTCAA 108948 36 100.0 36 .................................... TGATCAGGCAGGTTTCACCCCCGGGACCGATGCCTG 109020 36 100.0 35 .................................... CATAGATTACGCATTACCGCATAACGACGAATGGG 109091 36 100.0 34 .................................... CCCCAGCGAGTAGAGAATAATGACGGCGACTCCG 109161 36 100.0 37 .................................... AATTTGGGCATTAATCGTCCTGCGCCGACCCTGTACG 109234 36 100.0 37 .................................... GGCTCCACCTTCAAATTCAAGGCTAAATCCACCACCG 109307 36 100.0 37 .................................... GATGTGGATTAGAAGGGTTTGGCCCCGGACAGTGCGT 109380 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 99.1 36 GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : CTTACCCTGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCCGTTATATCCCTAGTCGCTTTCGGTAACTCTACCTGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCCATCGCCAAATCGCCGCTCAAAGTGTTCACGTCAACGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATACGGCGACGCATACGCCCACAAGAACTAGCACCGCACGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGCTCATGTGGAATGGTATGTGATTTTCTTACGTGTTGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTCCGGTACATGCCAGTTGAACACCTCAGCGTGAGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTCTTCATGTCCTAGCGACAGCTCAGGACTGGGTTAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGCTGTTTTGGAAGATGGAAAAGTTATTTTGTCTGAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGCTACCCGAAAATAGCCCGCAACCATGCGGCAGAAACGGGTGCTTCGCGAGAACCTCGTGGAGGCTACACGCAAAATTATACACTCCAACCTCATCTACCCCCGCATAACTCCCTGGCAAGGGAAGAAACCATGCGAGCGACACGCCATGTTCCCGTCACGTACCAGGTTCTCGCTCACACAAAGACCCCCGCCGGGTGCTTCCTAAGCGACCCGGCGAGGGTCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //