Array 1 51740-53509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQC010000015.1 Desulfobulbus alkaliphilus strain DSM 24258 NODE_15_length_101314_cov_78.3317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 51740 32 100.0 35 ................................ ACTGCTCCAGGGCTTTCAGGCGGGTCACGGCCACT 51807 32 100.0 35 ................................ CATAGTTTCCTCATTTGCTGCGCGGGCGACACCGG 51874 32 100.0 35 ................................ AGAGAGAGCTGGCCGATGTCGTACTCAATGCGGCC 51941 32 100.0 35 ................................ AGATTGCGGCACAATGTAACGATTTATCGGCAAAT 52008 32 100.0 34 ................................ ATGACCAACACACAGGTATCAGCAGCAAACTCCT 52074 32 100.0 35 ................................ TGCATCCAGGTCACCGCATCGCGGGAGTAAATCGG 52141 32 100.0 35 ................................ TTCGCCGTCCTGACCAATTAGGACACCACCGCCAT 52208 32 100.0 34 ................................ AGGTCCATGTGATAGCGGATATCCAACCCACCAG 52274 32 100.0 34 ................................ ATTTCCTCGGGGCTGGGCTGCGACATCACCCCAC 52340 32 100.0 35 ................................ ATATCGACAACAACTAGCCGAAATCATTGGATGAT 52407 32 100.0 35 ................................ ACCCAGATGCAAATCGCGATGGTGCAGACAACTCG 52474 32 100.0 34 ................................ GACGAAACCCTGGTGCGAGACTGCCTCAACGCCA 52540 32 100.0 34 ................................ AATCAAAAGTAGTCATGGCGGAGAAGCTGTCAAA 52606 32 100.0 35 ................................ ATCCCAGGTGCGATGGATATACAGCTCGCCATCGG 52673 32 100.0 36 ................................ ACCGTTACCGCCGACAGGCCACGGCGCGGGGTGGTG 52741 32 100.0 34 ................................ CCCTTGCCGTTGCGACCCTCGCCCAGGAACACGC 52807 32 100.0 36 ................................ GCCGCCGAGCAGGTCGTAGGTCTCGGAATGCTGGAC 52875 32 100.0 34 ................................ ATCGGCAGTTGGTGGAAAGCACTGATCATGGCCG 52941 32 100.0 34 ................................ ATGGAAGAGAGCAGGTACCAGGAGGATCCCTTTA 53007 32 100.0 35 ................................ CTCCCCCGACGGATACCACTGCTCGCAAACATGCC 53074 32 100.0 36 ................................ ACAAGCCGCCGCGATCTCGCCAGCACCCTTAAACTC 53142 32 100.0 35 ................................ AGGCTGTCCACAAAGCAACTCGCCAGCCTGCGCTG 53209 32 100.0 35 ................................ TTCTTTGCGCTCCAACGCCTTCACAAGTGCTTCGG 53276 32 100.0 36 ................................ ATAATATGCTTTCCTGCAGTTTGCGGATGCGGTTCA 53344 32 100.0 34 ................................ ACCATCGAGGCAAAAAAATAACCCCGACAGTGCC 53410 32 100.0 36 ................................ ACAAGCCGCCGCGATCTCGCCAGCACCCTTAAACTC 53478 32 96.9 0 ........................T....... | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.9 35 GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Left flank : TATCCGCCGGTGATCTGGAAATAGGAGGCGGTTATGATGGTTTTGGTGAGTTACGACGTGCGCACCAGCGAACCGGGCGGCGCCAAGCGACTGCGCCGGGTGGCCAAGGTTTGCAGCAATTATGGCCAGCGGGTTCAGTTTTCGGTTTTTGAGTGCATGGTGGACCCGGCACAATGGACCAGGATGCGTCAGCTTCTGATTGATGAGATCGATGTTGAGGCCGACAGTCTCCGCTTTTATTTCCTCGGCGCTAATTGGCGGAATCGGTTTGAGCATGTTGGTGCCAAGGAGAGTCTGGACCAGGAGGGCCCGTTGATTGTGTGAAATAGGAGCCGCGAACCGTTCGTAACCAGTATACCCTGGCAGGTTCGCGACACTCGTTAATGCGATGGTTGAGATAATTTGGCGAGGTGAAAGGAGGTGATCAATTCTCCCCAAAAAACAACGATCGCGGAATGTGTTGAAAAAAATGACTGGTAGCACAATGTTACCAGTCAACG # Right flank : CAAACCAACCGGTCAATCTGGGTCGGCATCGAATGTATCCGTGATGGAGGAACACCTGCCCTGTGGTTCAGGGCAGGCAGCTGACGTGTTCCATCCAGCCGGAATCGGTTGCTGCATCGAATTTCTCAAGAAAGAGGCGCTCACTGAGAAACAGTTTGCCGCCAGTGTACCGGGCAGGGAAGAGGCGGCGTTGGCTGGGGCCGCCATTGTAGAGGGAGTACAGCCAACCGGCAAGAAAGCGTTGCCCGTCGGGGGTATGCAAGTCAACGGATGTCTTCTCCCGCAGCACATAGTCACGCAGATAGAGACTGAGGATTTCACATCCGGCCTGGCTGTTATATTCCGTATTCCAGCGAAGCTGTTGAAGGTTGTATATGCCTCGCCATACTCTTTCGTTGATCTGCATCAGACCGACCGAGGTATTGTTGTAGGACAGCAGATAGGTGATTTTTTTGTTTTTGATATGAAATTGGCGGAAGCAGCTCTCCTGCCAGGCGGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 96366-102203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQC010000005.1 Desulfobulbus alkaliphilus strain DSM 24258 NODE_5_length_158033_cov_78.1143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 96366 36 100.0 36 .................................... CGCGTCGGCAGGCCGTTTGTGGCTGGGCAGATTTTC 96438 36 100.0 36 .................................... TTCACCCTCAACCTCCTATAAACAGGCTCAATATCA 96510 36 100.0 35 .................................... CAAGACTTCGACTGATGGGCGATCAATAATGTTAT 96581 36 100.0 37 .................................... ACTCCTTCATTTTTATCTTCACGATATTTATTAGTGG 96654 36 100.0 36 .................................... AACAGTAGCTTGTGTCATAATATCACCTCTGAATAC 96726 36 100.0 37 .................................... TTGATTCCTGGTCAAGGTATCCAAACTCGAGGGTAGA 96799 36 100.0 36 .................................... TTGGCAGCGGTCTTGGAAGCAGTAGCTTGTGTCATA 96871 36 100.0 37 .................................... AACTGAATGGTCAAGGTATCGAAGGATGAATCTTGCG 96944 36 100.0 37 .................................... CAATTCCTTGCCGATTGACCTTGACAGTGCAAGGTCA 97017 36 100.0 36 .................................... AGTGTATATCTTCAGCCTCGACAGTTACATGTATGA 97089 36 100.0 39 .................................... TTCTGCTCCTGTATCCATCTCGACACATAGCCAAGTGCT 97164 36 100.0 35 .................................... GTTAAGGTTTCACAGTCATCGATCAAAGTTACTTC 97235 36 100.0 36 .................................... CCACATCGTTAATCCATGACTGTTGATTGAGTGTTC 97307 36 100.0 37 .................................... ATGGAGTGGCATATTACACACCTTCCAAATACTTCTT 97380 36 97.2 37 ...........................C........ TGTTTGGCAATTCATTGGAAAACAATTTTGAATTGCT 97453 36 100.0 38 .................................... TTTTTTTTGCCGCCGCTTCACTTTTTCCATCCGCAATT 97527 36 100.0 37 .................................... TATACCTGTCCTGTCACAGTATGATTCTATTTCTAAA 97600 36 100.0 35 .................................... TCACAGACCATCTGCCGCATAATGCGATACTCGTA 97671 36 100.0 35 .................................... CATGCCTCATGACTCTCTGTTTCAACGCCTGATCA 97742 36 100.0 37 .................................... CCACGATTTGCGCCAGGTAATCTCCTGCCGGCAATGG 97815 36 100.0 35 .................................... TCCAATGACTAACTCTATTAGCTCGATGAACACGT 97886 36 100.0 35 .................................... ACCCGTAAAGGGTGGAGATTGGAGGTTTGATCTTG 97957 36 100.0 36 .................................... TGGTCATCTCATCTTGCCTCGTCTGTTCAACGACGA 98029 36 100.0 36 .................................... AGTTTCTTCCTCCTTGATTGGATTGATAATCTCTTC 98101 36 100.0 37 .................................... AAACAGCGTGCCACAACTGTCTTCTATCTACTGAAGA 98174 36 100.0 38 .................................... ATGGTATGGAATTCGATTTTTATTTGTACGTCGTCAGG 98248 36 100.0 38 .................................... TTCTGCCTTTCCGGAACTCTTCTGACCCGACAGCTTGA 98322 36 100.0 37 .................................... TGCCTCCGTTGGGGTGAATGGTGTCCCTGGTGTTCTG 98395 36 100.0 37 .................................... AACTCGTTCATGCGTCCACCTCGACCCTTGATCTTTG 98468 36 100.0 37 .................................... TCAAAAGAGAAAACAGAGTACCGCTATAACTGTTTAG 98541 36 100.0 37 .................................... AGTTGCATGATCAGGTTCAACGTATCGTCGTACTTCC 98614 36 100.0 36 .................................... TTTGCGAATTGCTGGAGTGTTTTGTACTTGGTGTAA 98686 36 100.0 40 .................................... ATGTTGCTTTACTCTGGTCAAGGATGAACCCCTGGAATAA 98762 36 100.0 35 .................................... TTTCCTTCTGCCAGCGCCTTTTCTTCTGTTTTCGG 98833 36 100.0 37 .................................... TACAACCGAGTAATTGTAGCGTTCGGCCAGCATTTTG 98906 36 100.0 37 .................................... CCGATTGTACTTCACTGGCAAATGCTTTCAATAGTGG 98979 36 100.0 39 .................................... ACCACCACTGTTCTGACTTCGTTCTGTTCAAAATTGAAA 99054 36 100.0 37 .................................... ATTCGCTGTGTTCCGGAGGGGGTGACAACGGATGAAA 99127 36 100.0 36 .................................... TTCATTCCGCGCTCCCCTCATACATCTCCACCACCT 99199 36 100.0 36 .................................... TCGTCATCTTCATCCTCAATAAAACATCGCAAAATT 99271 36 100.0 36 .................................... TTAAGAGAGTCCAGGGTTGATCCCGTTACTTCACCT 99343 36 100.0 37 .................................... TAGCTGGTCGGTCACGGATTGAATGGTGCTTAACGGA 99416 36 100.0 36 .................................... GGGGGGTGATAACGGGCAGGTCCTCTGTTGTGTAAT 99488 36 100.0 37 .................................... TTCGTGGGGTCTTGCCTCTAAAGAGGCCAAAAAATTG 99561 36 100.0 35 .................................... TTGTTCAGCCAAAAAATCGTCCGCATGGGCGGCGA 99632 36 100.0 40 .................................... CATGAGTGCAGGCTTCAATATCGCCAACACTTTCTTGGAC 99708 36 100.0 36 .................................... ATCCGCTCGCGCACGGTTTGCAGCCGATCCTCAATG 99780 36 100.0 36 .................................... ATATTCAACCAGCCACTCTCCGCTGGAGAGTTCAGT 99852 36 100.0 38 .................................... AATCTCTTCAATCGCACGTGTCCCAAAATACCCATGAG 99926 36 100.0 37 .................................... AGAACCATCCTGATTGCTTAGGTCAATTTCCGATTCA 99999 36 100.0 34 .................................... GTATAATCATTTGTTCCTCTTCTTTGTTGTTCTT 100069 36 100.0 38 .................................... TCCATAGAATTCATTTAACAAGGCTTTTTCTTCCAAGA 100143 36 100.0 36 .................................... TGGTTGCATGGTATGCTTGGAGAGCAGAAACTTTTC 100215 36 100.0 36 .................................... CAATTAAAGTTTTCGCAGATACTTCCGGCAAGACCA 100287 36 100.0 37 .................................... TTCTCCGAATGGATTGAAATCATAGCACCAAACAAGA 100360 35 97.2 38 ............................-....... TTTTCGGTTAACTTAACGATCTGTTCGAAGTTATCTAG 100433 36 100.0 37 .................................... TCCGGTGTCGGCATGGCCTTGAGTAATGTGTTCGTAG 100506 36 100.0 38 .................................... GGATTTATCGATGTAGGCGTGCGGCAATCCTTTTGCGT 100580 36 100.0 37 .................................... AATTTATTGCCTCTGATACCACATATCGGAAGTAGGG 100653 36 100.0 36 .................................... ATGATTTCTTCAATAGGATGAGCCAAAACGATATCA 100725 36 100.0 36 .................................... TGATCAACTTTTTGCTAAGCTGGTCGCTCACGGCCT 100797 36 100.0 38 .................................... TTCCGCCACAACTGTTCTCAGTTCTTCGGTGAAGATGG 100871 36 100.0 35 .................................... TTTGCTCAGTTGATTAGATACGTTACGAATGGTTG 100942 36 100.0 36 .................................... TTTTTAATATTGATTAAGCATCTGGCGACGGGAACG 101014 36 100.0 37 .................................... TTTTGTTCATTTGATTCGATACGGTCTCGATGGTAGA 101087 36 100.0 38 .................................... TTGATCCCATCAAATCAGGGTTATGAGCCCTAATTGAG 101161 36 100.0 36 .................................... TATTTCAATTATTTATTACCAATAATGCCAAGCTGC 101233 36 100.0 35 .................................... ATACAAAGGAGGAAATTGATTGTCAAAGAGCTGTG 101304 36 100.0 35 .................................... GATCGTTGACAGCGGACGTTCGTTTACGGGAGTGG 101375 36 100.0 37 .................................... TCAGGAATAGGGAGGTTTTGCGGATAGTCAACATCAA 101448 36 100.0 36 .................................... GCGACCATACGATCGCGATACTTTTCATGGGGTTTG 101520 36 100.0 36 .................................... CGTTTTCTACCAGATATTTTTCGTAATCCATCTTCA 101592 36 100.0 36 .................................... TTGCCCACCCTCACTTCTTCTTCTTTTCCATTATCG 101664 36 100.0 36 .................................... ACAATACTTACAGAAAGCCTTAAACAGGGGAAAAGA 101736 36 100.0 36 .................................... TTTAGCCCTTTCGCCCCGAAGCCCGGATATCAGTTC 101808 36 100.0 35 .................................... TTCTGGGCCTTTTACGATCTCAGTTGCCCTGCTGT 101879 36 100.0 36 .................................... CGTTTTCTACCAGATATTTTTCGTAATCCATCTTCA 101951 36 100.0 35 .................................... AGGGTCTCGATGACATGATCCAGCAGGTCCTTGTT 102022 36 100.0 38 .................................... TTAATCAATGCCTGTACAAAGGTTGACAGGGTTTGCCC 102096 36 100.0 36 .................................... CAATTTCAACCCGGTATGCTGTCAAACCTGTTTTTG 102168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 81 36 99.9 37 ACCGGAACGAATGCCCCGATCAGAGGGGATTGAGAC # Left flank : CAACTTAAGGTACCAAAATGATTTTCATTTCAACCTCCTGGTGGTTTTGCGGGCATGCGATACGTTGTTGCTGAAAATGTTTCAATTCTACATCTTATTTTATCATCACGCTGATCGAGTAAACCCATGCGTACCGCCACCACTATAGACGATACTGCTCAACCAGCAGGCTCAGAAGATGACCGACCCAGACATTGCGAACTCCGAGATTTCTTGAAAAGCCATCAAAACTTTTATACGGTTCAGGTTGTTAAACGTTTGGCACCCCTGAATTGCAGCGTTGACCGTCTTATTGAACAAAAGGTAATTTCAGACAGAACTATTCGGGTTAGATTTGGCACGGAGGTGCTCGAATTTGATTTTATTCTGTGCTTACAGGATATTGGCATGGGCAACGTGGACCTTGGTACACGCTATAAAATTCCCGAACCCTTTTTCAGGGGAGGTGCCCGAATTTCCCTTTGTAACACCTGGATTAGATAAAAGATTTTAGGGTAAGG # Right flank : CTAAAGACCCGGTGGTTGATGCGCTGTATCGTGCGCAGAAGGGCAATATTCAATGAGTCTGCATAGACAGAGCGCTTCGCGTTCTTACTGAAGACGATACATTTAACCAATGGACGGTAACTTGGCGAAGCACTTCTTTGATTATAACCCGACCAGGGAAGAGATTGATACAATCTGTGGCGATCCTGATGACCCTTTTGCCACTGAAACCCTGAGATTTTTCGAGGGTACTGATTCAGAACGATTCAAGATAGCCATCTTGCTGTATGGCCGTGGCGAACACAAGGCGGCGCTCAAGATGGTCAAGTCCATAGAGAACGCCGAATACCGGAAAGACATGCTGCGCATCGTCCAGTCATGGATCAATTTACCCAAGGGGGCGTTGTGGTGATGTGGACCTTCAACGCAGCATGGATTCAGTGATCCCCATGGCGAGCGCCAACTTTTCAAGAGTGGCTTTGCGGGTTTTGTGCTCGCCGGATTCGATCTGTGACAACGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGGAACGAATGCCCCGATCAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //