Array 1 42053-43401 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLX01000056.1 Pseudomonas aeruginosa strain Pae_CF67.04i CF67.04i_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42053 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 42113 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 42173 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 42233 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 42293 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 42353 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 42413 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 42473 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 42533 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 42593 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 42653 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 42713 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 42773 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 42833 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 42893 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 42953 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 43013 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 43073 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 43133 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 43193 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 43253 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 43313 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 43374 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3931-5575 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLX01000053.1 Pseudomonas aeruginosa strain Pae_CF67.04i CF67.04i_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3931 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 3991 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 4051 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 4111 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 4171 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 4231 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 4291 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 4351 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 4411 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 4471 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 4531 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 4591 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 4652 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 4712 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 4772 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 4832 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 4892 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 4952 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 5012 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 5072 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 5128 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 5188 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 5248 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 5308 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 5368 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 5428 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 5488 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 5548 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //