Array 1 127518-127128 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPDS01000008.1 Pseudomonas cichorii strain 473 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127517 28 100.0 32 ............................ ACTCTGTGTTCTCGACTGACCGGCCATGGCTG 127457 28 100.0 32 ............................ GAAACCCTTCGCCCAGACAACCATCGCCTGAC 127397 28 100.0 32 ............................ CGCGTGGACTGCCAGCGCTGTATCAAGGGCAA 127337 28 100.0 32 ............................ GCCGCAGTCACCTGCCTTCTTGGGTTGTAAAT 127277 28 96.4 33 .....A...................... ATTTATAGTAAGTATGTCACCTGCTTTTACAAT 127216 28 100.0 33 ............................ GGCATTACTGAAGAGATGTATCAAGAGCTTGTC 127155 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTCCGGTGTGTTTGCAATGCTGGTTCACCACTACATTCCCGAAAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTGCTGCCGATTCTGCATCAGCAACACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCCCTGAGCGTATTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGTGACATGCCCCATGTGGTGATGGAAGTGCCTCCCCGGCCCAAGCGAGGAATATGGCGCAAGCTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGGCGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGTCTGCCGGGTTCTGACCCTCTTTTTTCAGTCCCCTCCAGACCCTTTTAAAATCAATGACTTATAAAATTCTCGAAAAAAAGGGTAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : CCGAATTGCTCCAGGACCTGAAATTCCCAACCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGCGTAGAGGGCGTGTGCGTGAGCGATAGTAAAGTCCGGGTGGACAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCGATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACAATGCCTTCCTGGAGATGACGGGCTATTCGTCCGATGAAATTGTGGGCCGTAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAAGGCCATCGAGAACCGGGAAGACATTGCCACCGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 140217-139108 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPDS01000008.1 Pseudomonas cichorii strain 473 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140216 28 100.0 32 ............................ TTCTTGATCGCCAGTGCCCGCATAGCTGCTGT 140156 28 100.0 32 ............................ GTGGCGTACAACGTGGCCCGCGCTCGTATCTT 140096 28 100.0 32 ............................ TGAGCACGCCCTGCGCGGACATCTGCGCTACC 140036 28 100.0 32 ............................ AGTTCTGCCCGGTTGAAAGCCCAGCGAGCGAA 139976 28 100.0 32 ............................ GCCATGCTTACAGTGATCGTGACCGGCTTTTG 139916 28 100.0 32 ............................ AAGGAAATGAGCCCTGAAGAATTCGAGGCTTT 139856 28 100.0 33 ............................ TGCAGTTCTGGTTCTGTAAGGAAGGGGTACGAA 139795 28 100.0 32 ............................ GTGACGATTGAAGACGACGAACCGGCATTCGT 139735 28 100.0 32 ............................ ATGGCTTCGCCGACGACGAGCGCGAGTGGGAG 139675 28 100.0 32 ............................ GGATCGTGCCGACCAAGGGCGACGCTTATGTC 139615 28 96.4 32 ............G............... AAGCGCACTTTCTCAATACGCCGATAGACATA 139555 28 96.4 32 ............G............... GCCATATGAGTGAACGTCCAGGGAATCCCCAG 139495 28 96.4 32 ............G............... CCGGCCTGGCTCTCCGGGCCCGCTGGCTAAAC 139435 28 96.4 32 ............G............... TTCCGAGGCGAGAAAAGTGAGCGATGATCAAC 139375 28 96.4 32 ............G............... AGCGGTGGCGCGATGACCACACACGTTGCATC 139315 28 96.4 32 ............G............... GTAACCCCCATACTGATGACGGCCTGGAATGT 139255 28 96.4 32 ............G............... ACGCTAATGGCGTTCTCGGAGTTGCGTTGGTT 139195 28 96.4 32 ............G............... TTCTCGCCCACTGGGACGATCTCAAGCCTGGC 139135 28 75.0 0 ...........C........TC..ACTC | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCACATAGCAAGACACTCAAGCAGTTGCAGAGCTTGGGGCGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCCGGGTTTTGGTGATTGTCGGCCTGTAGGAGCGCGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGCACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCCGAGTAGAAGCGAATTCATTCACAAGTCGGCGTTCCAGACAATACACCTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCCCCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCATCCCTTTAAAATCAATAAGTTACGACTCCCTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATGAGGCAAGGTGTCTA # Right flank : CACGTCACAACCGTCAAATCCTACATTCCCACTCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAAGCCAGCCAGCCCCCAAGCTACCCTTCCCGTAATTCGCTGCCCATCAGCGACCGGGTTTGGCGACCTGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTACATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATTTTCACTGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTCGCCCGCTTGATG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //