Array 1 693190-691924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKC01000001.1 Akkermansia muciniphila strain GP42 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 693189 31 100.0 34 ............................... CCTTAACGCTCCCGGGATAGAAGCACACATGGGC 693124 31 100.0 33 ............................... CGGAGGATTGCCCGGAAGAAGATAAACGCGAAA 693060 31 100.0 33 ............................... TCCCAATCCCCAAACCACTGCTTAAACTCCGGC 692996 31 100.0 34 ............................... GCAAACTCCTGCGCCACATTTGCCCCGTAAACCC 692931 31 100.0 34 ............................... GACTAGCAATTATATATGCCCGCGCGGCTTTATA 692866 31 100.0 34 ............................... TTCTTGTTTATAATAATTTTTCAGAACCGCGCCA 692801 31 100.0 34 ............................... GCCGTCAAAGAAATAAAAATATTGTGCCCATGAA 692736 31 100.0 34 ............................... TTGTTATCATCAATAAACATTAACGCCCCCCATA 692671 31 100.0 35 ............................... CCCTTAACATGTCTTTATATTATCATTTTAGATTA 692605 31 100.0 34 ............................... GATGGAGGTGCGGTAGCGGCTTGCCGCTTCCGGA 692540 31 100.0 35 ............................... CCCACAATTGACCAAACAAGCCTTTTTGCAGGCGG 692474 31 100.0 35 ............................... CGGAAAGTGAAATTCAAGACTCCGGAGGTTAAGGA 692408 31 100.0 33 ............................... TGGCTGGGGGGAGATTGTCTGGAAGAGACTGGA 692344 31 100.0 34 ............................... TGGCGGAACGGCTGGGGCTGGATACGGATGAAGC 692279 31 100.0 34 ............................... AATATTCACGCCACGGCGCACGTGCCGGGGGATC 692214 31 100.0 34 ............................... CGAAGAATGCCAGCCGTATCTGGCAATTCTTCTT 692149 31 96.8 33 ..............G................ GGGCAAATGGGGCTCAAAACGGTCATCAAGCGT 692085 31 96.8 34 ..............G................ AGGATAGTATTGCGATACCAGAGGTTATTGAAAA 692020 31 96.8 34 ..............G................ CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 691955 31 83.9 0 ..............G......A..A....TA | G [691937] ========== ====== ====== ====== =============================== =================================== ================== 20 31 98.7 34 GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGTGCCGCCCGGGAGGCCTGTTGTTTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGAGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATATTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCTGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93031-95913 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKC01000006.1 Akkermansia muciniphila strain GP42 scaf-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 93031 31 100.0 34 ............................... CCGAAAATAGAAACCACAGCAGCCAACAGAAGAA 93096 31 100.0 34 ............................... GAGATAACAATCATTGAGAAAGAGGAAACACCTA 93161 31 100.0 34 ............................... CCAAAAATGGGTGCTGAAAAATCCACATAGGAAT 93226 31 100.0 33 ............................... ACAAAAGATTATTACGTGCAACTTTTCCCCGCC 93290 31 100.0 34 ............................... AAGTCAATTTCTCCCGGACAGTTTTGCGGAGAGC 93355 31 100.0 33 ............................... CAGCGAGCACCCATTAGGAGCAGCGGCCCAGGC 93419 31 100.0 33 ............................... TTCATCCTCCCGCGCCAGCAACCGCGCTCCGGC 93483 31 100.0 34 ............................... TTTGCCGTATCTGTTAATAAGTGCGGTCAGGACA 93548 31 100.0 34 ............................... GCGTTTTTCAAGGCAAATGAACAAGAGCTCCGGG 93613 31 100.0 34 ............................... CGCCTGGAGCTTTTCCAGTTTAGCTCGTACTCCC 93678 31 100.0 34 ............................... ATTCTCTGGCTAAGGTGACCGTCCGCGTGAGGAT 93743 31 100.0 35 ............................... ACGCCGTGGTGCTGCGCCTGCAATGCCATGAGATT 93809 31 100.0 34 ............................... CCGCATCATGACGGAGGCCATGCGGCGCGGATAT 93874 31 100.0 34 ............................... CGCCTGCTGCATCATTAGGGACGGCGGAAGGCCG 93939 31 100.0 34 ............................... TGGCACTGCTGCCAGAAAACCCCACTCCTTCAGC 94004 31 100.0 33 ............................... TCCAGCGGTAAGCCGTGCTTTTGTTAAGGCCGA 94068 31 100.0 34 ............................... AGCCACCTATCGAGTTGTCATTGCTCAATCTGAA 94133 31 100.0 33 ............................... AAGGATGTCATGAAACGGCGGAATTGATCAAAT 94197 31 100.0 34 ............................... CGGGACCGCTCATGAGCGGATGGGCGCGGGACAT 94262 31 100.0 34 ............................... TCCAGGTCAAATACACCATAGCGGACTTCCTTCT 94327 31 100.0 33 ............................... CTAAAATTCACTCCGTCAAGGATGGCTTGCCAT 94391 31 100.0 34 ............................... AATCCACACGCGGCAAAAGAACAAGATACCATTA 94456 31 100.0 33 ............................... CTGCATCATGCAGGACGCCCCGCTTTCTCTGGT 94520 31 100.0 34 ............................... CAGGTCCCCTGGCTTGGATTGTTCCACGTCGCGC 94585 31 100.0 35 ............................... CAGTTTGGCGCGCACGTCCGGAGAAATGGCTCCCA 94651 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 94716 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 94781 31 100.0 34 ............................... GCACAATTCCCGATGCGTTCGCGGGATTAAGGAT 94846 31 100.0 34 ............................... TTCATGAGCGATGTTCCCGCCCCCTGAAGATTGA 94911 31 100.0 33 ............................... CGGAACTCCGCATCAATATCGTCCTTGTACAGA 94975 31 100.0 33 ............................... ATCATTGTACCCGTACTGGTACACGCGCCCGGA 95039 31 100.0 34 ............................... ATGGATGATGCACGTAAGCAGGAACTCCCGCGTA 95104 31 100.0 34 ............................... TCCTTTCACTCTTGCTATGCAGGTCCTAAGATGC 95169 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 95233 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 95299 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 95364 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 95429 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 95494 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 95559 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 95625 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 95689 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 95753 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 95818 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 95883 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 45 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 212594-213408 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKC01000003.1 Akkermansia muciniphila strain GP42 scaf-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 212594 31 100.0 33 ............................... GGCCCTACGGGAGCCAACATACGATTTAAAACC 212658 31 100.0 34 ............................... TTGATATTAGCTACGTTAACGGAAACGTTATTTT 212723 31 100.0 35 ............................... CTTATACATTAGTTTTCAGGAACATACACGTTTCC 212789 31 100.0 34 ............................... GGCTTTATGGCTCCTGCTACAATGTATCAAAACT 212854 31 100.0 34 ............................... TACCAAGCTAGCAAAAAATGCAAGTTTCCCGTTC 212919 31 100.0 34 ............................... CGGAGAAGGGTACGATGTGCTGGAGGAAGACCGG 212984 31 100.0 35 ............................... TTTGAGTTCCAGCGTGCATCCGTTCGGGGCGGCGG 213050 31 100.0 34 ............................... CGTCGGCTGGTGCGCTCGGAGGAGGAAATTACAG 213115 31 100.0 35 ............................... TTCAAGCCGCCCAGTAATAGGGCGGCTTTTTTATT 213181 31 100.0 34 ............................... AAATAATCATTGAAAATCCCCACGGCTTGCTGTG 213246 31 100.0 34 ............................... GCCGCCTCCTTGGCCGCCCCCCGGAACCGTGCGG 213311 31 100.0 35 ............................... CAGGAATGCGTAGCGAGGTCGTACCTCATTGATAA 213377 31 80.6 0 ................AAT....C.....CA | G [213402] ========== ====== ====== ====== =============================== =================================== ================== 13 31 98.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTTGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACAGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGAAATTCCCCGGTAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : ATCCAATGTCAGCCCTACTGGATGGGCATTTCATTCAATGGGGTTTGCCGGAGGAGGAATGCTCATTGAACAGATTTTCTTGGTGGTTAATAAAGAAAGATAATGGTGAAGGTTTGTACATTCAGCAGGGGTAATCTGTGACACAAATGAAACTTCTAGAACCTGGAAGAATCAGTTATAGGAACTTGGCCATGGGATGTTAGGTTCCCATTGCATCTTTGCATCAAGAGAGGAACAGACGAGATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTCATGAAATTATCAATGATTCAGCCATGGCTTATAAAGACAGGATTCCTGCCGATCGATGGAAGGAACCTTACATGCCCATGGATGAATTAAAGGAGCAGATTAGGGGTGGTGTGGTGTTTTATGGTTTTGAAGATAATGGATACCTTCTTGGCGTGATGGGGATTCAGGACCGGGAAGACGTTAAGCTCATACGTCACGCCTATGTCAGGACGTGCGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 222539-223510 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKC01000003.1 Akkermansia muciniphila strain GP42 scaf-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 222539 33 100.0 34 ................................. CCGGAAGGAAAGGGAACGAACAAATAAAACCTAA 222606 33 100.0 34 ................................. CGCATAGGCGTATTGTGATAAAGTTGCGTGGTGG 222673 33 100.0 34 ................................. AATTCGTGACTGCTGTTCTCTTAATTCTGCAGCT 222740 33 100.0 34 ................................. CTTGTACAGGACATAGACTTCGTTCTCCATGATG 222807 33 100.0 34 ................................. CCGTGACGTAACCCTTGAACGCCAGGAGGGGGGA 222874 33 100.0 34 ................................. AGCCTTATCGCCATCTGCTCCAGCAGCGGCACCC 222941 33 100.0 34 ................................. GCCACAATCGCCCCCGCCCGGTCCAGCGCGCCCT 223008 33 100.0 34 ................................. ATGATTTTGTTCTTTCGGTTGTTTGTTTTTTCCG 223075 33 100.0 34 ................................. CATTTTATGCAGAGTGTTGCCCCAATTGCGGCAA 223142 33 100.0 34 ................................. TCCGGCATGTGCTGAGTATAAAGCAAACTCGTCC 223209 33 100.0 34 ................................. GTCAGCTTCATGGGGAGCCTGTTGGAATTGGTAA 223276 33 100.0 35 ................................. TCTGGTAAAGAACTTATAAAATCTTACGGCTTCCT 223344 33 100.0 34 ................................. TGGGCTGGCACGCAAGGGTGGCTTTCCATGCTGG 223411 33 100.0 34 ................................. TCGTTGAGATTATTCAAAGCTATAGCAGACAAAT 223478 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 15 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATTGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTATAAGAGAAGGCTAGGTGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //