Array 1 111353-111734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVI010000019.1 Bacteroides fragilis strain 1001271B_151109_A3 NODE_19_length_113878_cov_20.8287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 111353 35 100.0 36 ................................... CCCCGATGCGTTGTGCGGCATGAAAAATTTTTATCA 111424 35 100.0 33 ................................... GTTCTTGGTTACATAGGTAATGGTGTCATTGGT 111492 35 100.0 33 ................................... TTCCGGAGCTTCATTCCAATATAGCTCCTTACA 111560 35 100.0 35 ................................... TTGAAACCAGAAAAGATAAAAACTCTTTGGGAAAA 111630 35 100.0 35 ................................... GAAGGCAATTGCTTTTTTTGCCAGCCAATTGTAGA 111700 35 85.7 0 ...........................C.A.C.GT | ========== ====== ====== ====== =================================== ==================================== ================== 6 35 97.6 35 ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Left flank : CATAGGCATCTTGAAGATTCCCCGCATTCACTCGAAATAGTTTTTTTCTAAATTCTTTTGCGAAAAAAAGAAAAAACTTAGTCATCTGATAATATGAAGATTATTCTATATTAAGAAAAAATAAGTGTAAAAAGAGATGCGCAAATAATAGCTTTTACGTATATTAGCAAATCATTTGCGAAAAAAGGATTGATATGTTATGCGCTCTTTGAAATATTGTTCTATATATCAGCAACTTACGCAACATAGTTTTAGGGTTGTTTTCGAAACTCGCCCACCCCTAAATATCCAACGATTATTTGCGAAAAATGAAGTTTACACAGCATTCTAATTATCAATCATTTAGGTCAAAAAATCACTATTTACACATCAGAATTACAGAAAAAAAGACCTACTTTTGCGAAAAAAGACTTAGATTCGCATCTACTATTCTGGTTTACAACCTATTATGATCACAGACAAATACATTTAAGAATATATAATAGTCTAATAATCAGAGT # Right flank : TTGGTTCTTCTTCAAATTTGGTGGTAAGCTTTCTTCTACTCATGAATCTAATTCAGTTTTCGGAAGTGTAAGCTCTCGTTTATAGTTGACAAGAAAGCAAGTATCCCGGCTTTCGCCCGAAAAGCCCATTCGTGAGGCGGAGAAGCGAATTTTAGACTAAACCATCTGAAAATCAACATCTTTAAAAAGTAAGATTTCTATCCTCAAAAGCTTTGTTTTAACACAGAGTTAAAGCTTATTCTTTGGATGTAAATAACAAGTTCTTTAAATGCATAAGACTTGTTATTTGCGCACAAGAACCTGACAACCTGAAAAAGGCGTTAACAATGTTAATTGAAGAAAGGTATAAGGATGAAGATACCGGTTCAGACGGTGTAGATTCACTTCCGAAACTTGAGTTATCTGATTCAGCCAGTGTCTGTTTTTTCTTATTAAAGCGTAAGCATTCGGCCTCGTGCGTGTTTCTCTCCAAGTTATAATAAAGTCAAAAGCCAGACGTA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 37762-40096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVI010000018.1 Bacteroides fragilis strain 1001271B_151109_A3 NODE_18_length_125108_cov_21.9107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 37762 29 100.0 35 ............................. AATAGGGGCTTATCAGTATTTTCTACACTGGGATA 37826 29 100.0 35 ............................. GTTATAACGTCCTTTTTTGACGTTCATCTCGTTTT 37890 29 100.0 36 ............................. ATCTTTCAAAACAAGATAAGGAATTGGATAAGCAAT 37955 29 100.0 36 ............................. ATAGCTCCGGCAAACCGTCTAAGCGATAATCGTACA 38020 29 100.0 36 ............................. ACGTTAACTATTTAATTATTGTAGTCACTTTTAAAT 38085 29 100.0 34 ............................. TCTCTTTGTAGCGTTCATTGATCTTATCTCTGAT 38148 29 100.0 35 ............................. ATCGTCACGATCCTCTGAGTCGGTAAACTGATAGT 38212 29 96.6 35 A............................ ACTTTTCAAGAAGGCGATTTGGTACGGTGTCAGAC 38276 29 100.0 34 ............................. ATATGTTACACAGGAAATTCAAGCCCTCGACAAT 38339 29 100.0 35 ............................. TTGCAGACGCTTCGGAGTACGCAATAGAGAATCTT 38403 29 100.0 36 ............................. TAATTCAAAACATAAGAAAGTAAGTCTAAATACTGC 38468 29 100.0 35 ............................. TCAAACAGTGGCCTACGCTCTAACAGCGTCTTTGT 38532 29 100.0 35 ............................. AGTCATAGGCGTAACGAGCACCAACGGTATTTCGA 38596 29 100.0 34 ............................. TGCTTTTAATGTTTATAGTAATACAAATCTTTAA 38659 29 100.0 35 ............................. ATTCTGTACTTAATCATTAATAGCTATCTTGCTTT 38723 29 100.0 35 ............................. AGACCTTTAGATGAACGTTTCAGTTCTTCGATCTC 38787 29 100.0 34 ............................. GTATAATTCAAGTCGAATGTGTGTATTGGCTGAG 38850 29 100.0 35 ............................. TCAATCTCTCTAAGAAGTTTTGCAAGTTTATCATT 38914 29 100.0 34 ............................. ACAGCAAGCAACCGCCAAGCAAGTTTAACCTCAG 38977 29 100.0 35 ............................. ATCCCTGTTGAGTCTTTGTTTGTAGGTGACAGAAC 39041 29 100.0 35 ............................. ACATTAAGTACCTGCTTGAAAATGGTGTTCATATT 39105 29 100.0 35 ............................. TCCGAGGAAGATGCGAAAATCGTATTTGCTTCAGT 39169 29 100.0 34 ............................. ATATATTCCGGTTATGAACAAGATTGCGATTATA 39232 29 100.0 34 ............................. TGTTAAATTAGACGTTCGGTATAGCTTCGTTCCA 39295 29 100.0 36 ............................. ACATACTTGGCAACTGGCTTCAATTTTCCTTTCTGA 39360 29 100.0 36 ............................. TACTGAGAACCATCTTTCTTTATTTCAACCTTCATA 39425 29 100.0 37 ............................. ATATTCTTTTGAAACATAGATACAATTTGCTTTCTAT 39491 29 100.0 35 ............................. AAGTATCTACAGGCTGTGTACGAGTAAACCATTCT 39555 29 100.0 37 ............................. TCAATTTTAATTTCTGTCTAATTATCAGATAGTTGCA 39621 29 100.0 34 ............................. ATGTAAATTACGAGAATTATTTTTTTGATTGTGG 39684 29 100.0 35 ............................. TATAGAAAAGGCAGTAAGCACAAGTACCATAACTG 39748 29 100.0 36 ............................. TCTATTACCATTGTCGTACATTCCTTTTTGAAATTG 39813 29 100.0 35 ............................. TCGTTGGGAAGTACACCGACATTTCACCCTCTATT 39877 29 100.0 34 ............................. AAAGCAAGGTATCAGTATTTGAAAAGTCTATTCG 39940 29 100.0 35 ............................. TCATATAACCCCGCTCCGGTTGCATAGCCTCCTTC 40004 29 100.0 35 ............................. CTGAGAAAAAAGCAAAATAAAGATAAAATGACAGG 40068 29 86.2 0 ..A......................G.CT | ========== ====== ====== ====== ============================= ===================================== ================== 37 29 99.5 35 GTGTTAATTGTACCTTATGGAATTGAAAC # Left flank : CGTTTAAAATGTATTGGTAAATATGTATGTTATTTTAGTTTATGATTTTGGTGAAAGGAGAGTTTCTAAGATGTTGAGATTATGTCGTCGGTATTTGAATTGGATCCAGAATTCTGTGTTTGAAGGTGAACTCTCGGAAGTACGTTTAAAAGAGCTATTATTATTGGCAAAAGGGTTTATGAATCCCGAAGAAGATTGTATTATCATTTTTAAAGGGGCTACTCAATGCTCTTTGGAGAAGGAAATAGTGGGTAAAGAACTTTCTAACATCGATAATTTTTTGTGAAACGGTTGTCGAAGTGGATCGTTATTGTGAATTATTCAATGATAATGCAACCGAAACGCTCTATGACGTGTTGATACATAGATGTTTAGCGCCTATGTCGCTAACCCATGTTTTTTATATTATTCTTGATCGACGCATTATTTCTAAATAAAAGTATTTTTTCTAAAAAGTATTTGTCTTATTACTAAGTGATTGCGTTGGTTGATGGACAGGG # Right flank : TAAGGAAGATGTATATTTATAAGATTGGCTTAATAGAACTTAATAGAATGAATTTTTTTTTCTTGCTAGCATATTCTCTCATTATCTTTTGGGAAATGTTTTTATTAATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCCTTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAGATGCTGCTTTTATTGGTAGCTATAGTAGGCTTGAGCTCTTGTGGCGACAAGTATTATTCAGATGATTATTTGCGAAACAGTAATGCAAAGTTATGCGGAAAGACTTGGGTGAATGATTCTGATAAAAATGATGCGGATGAATGGGTGCGCCATACATTGAAGTTTGATGATAGCGGACGGCTGGCAGAAACTTATGCTTATTATCATTTGAATGAAAACCAACCTTACCGGACAGAAACAAATAATCTGACTTGGTCCTGGATAGACGATTCGATGGAAGGAATTGTTTTTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATTGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //