Array 1 460851-462403 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXO01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3892 NODE_3_length_696139_cov_94.361610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460851 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 460912 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 460973 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461034 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461095 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461156 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461217 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461278 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461339 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461400 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461461 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461522 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461583 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461644 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461705 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 461766 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 461827 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461888 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 461949 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462010 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462071 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462132 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462193 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462254 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462315 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462376 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478718-479235 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXO01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3892 NODE_3_length_696139_cov_94.361610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478718 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 478779 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 478840 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 478901 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 478962 29 100.0 32 ............................. GATGCGTCTTTTCCACAGCAGGACTCTAAATC 479023 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479084 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479145 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479206 29 93.1 0 ............TC............... | A [479233] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //