Array 1 227272-228033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030864.1 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227272 29 100.0 32 ............................. GGCACGGTGCCGCCGGCCCCGGTCCCGTCGGA 227333 29 100.0 32 ............................. AACAACGGGCTGCGCGTCCGCGAGGAGGCGGG 227394 29 96.6 32 ............................T GACGGTCAGCCCGGTCGCGCCGTCGGGGAGCG 227455 29 100.0 32 ............................. GCTGCTGCGTGTTGACCGTCGCGCGCTCTATC 227516 29 100.0 32 ............................. ACCTGATAGCTGATCCACTTGGCGATCAGGGC 227577 29 100.0 32 ............................. GTCGTCCATCGTGCGCTTCGTGGTCATCGTCT 227638 29 100.0 32 ............................. GCCCCCGGCGTCGGCGGGCAGGCAGGGCACGA 227699 29 100.0 32 ............................. CGCAAGCTCAGCGCGTGGACGGTCCATGTCCA 227760 29 100.0 32 ............................. TCACTCGGGGGCCGCCAGGTCTCCGAGGCCGT 227821 29 100.0 32 ............................. GCGTCACAGCTGACCAACGACCTGATCTCCGA 227882 29 100.0 33 ............................. CCCCACGTCCACGGACCGGCGGAGTTCGGCGAT 227944 29 100.0 32 ............................. GTGCCCCTCGACCACGGGCCCGACGACGTCGA 228005 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GCCGAACACGCCGAGCTCGCCCGCATGTCGGGGGAGCGGCAGACCGCGGAGCTGCTGCGGCTGTGGACGCTGAAGGAGGCGTACACCAAGGCCCTCGGGCAGGGCCTCCAGCTCGGCTTCACCGAGTTCGGCTTCGGCCTGACCGGCGGCGGCCTGATCGCCCCGGACGGCACCCCGGCCGCGGGCGGGGAATGGGCGTTCGCGACGCACCCGGTCCTGGCCGACCGCTACCTGCTGAGCACGGCATGCCACGACACGGGCCTGGACACGGCCCGCGACACGGCGGTCGACACGATGCTGGACCCGGCGTTCATGGCGGCGGTGGAGGACGCCCTGGCAACGGGGTGACCCGCCTTCCAGTCAAACCCCGCTTCGCCTCCCCGCTCTACGAGCCGTTCATGTCGAAAACATCCCGTCTGATCCATTCGAGCATATTGCCGGATTCTGTGAAAGTGCTCAGAACCGCGCGCCTTCTCGCATAACATCGCAGCTCACGTAGC # Right flank : CGCGGACATGCCGGGCAGGCACTGGAGTACAGGCTGCTGTTCGCGCCTGCCGTTCGCACGTTGCAGCCCGTTGATCCGGGCGCGGGATTCGGCGCGGCGATGCACCTCTTCGTCGCCAGTCTCGTTCACTCATATGGGTGATGTCTGGGAAGCGGCGTTCGGACCGCGCCTGGAGCCCGGATCATGAACAGGCTCCCCTTTCCGCCAGCGCGGCGAGCCCGGGAGCCCGCTCTCCGGGCGGGGATGGGGATTCCCGCCCGGGTGCGCGTACCGAGGTCCTGGGGGGATCGAGATGCACGACGACGCACCGCACTGGAGCGCTTCGCTGTCACCGGCGGCGCGGAGCGTGTGGGCGAAGCACGAGGACAAGACCTCGAAGTGGCTGCCGCTGTGGCGGCACATGGCGGACTCCGCCGCGATGGCGGAGCGGTTGTGGGACGAGTGGCTGCCGCATCACGTTCGGCGCCTCGTGGCGGATAGCCTCCCCGACGGCGAGCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237740-238806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030864.1 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237740 29 100.0 32 ............................. CCCTCGACCATCAGGGTCCGCGGCACCTCATG 237801 29 100.0 32 ............................. GCACATCGAGAAGACGATCCCGGAGACCACGA 237862 29 96.6 32 ............................G TCGGGCACCGTCTACCTGGTCGGCAACGGGCG 237923 29 100.0 33 ............................. CCCCGGGCTGCGGCGCGGTCGAACTGGACCTGA 237985 29 100.0 32 ............................. GCCCAGACGGCGTCCGGGTCGGGTGCCACGTT 238046 29 100.0 32 ............................. CGGTGCCAGGATCTTCGCCCGGTTCATCACCG 238107 29 100.0 32 ............................. GCGACGGCGAGGATGACGTCCGTGCCGTCCGG 238168 29 100.0 32 ............................. CGCTCCTGACGGCGATCGGGCCGACCCAGGTC 238229 29 96.6 32 ............................G CACATCATCGAACTCGGCGAAGAAGTTCTCCT 238290 29 100.0 32 ............................. ACGTCGGCGAGCGGGTCCCCAGCCGGCGCCTG 238351 29 100.0 32 ............................. GGTACGAAGTCCCTGTCCGCGAACGCGCGGGA 238412 29 100.0 32 ............................. CAGATATGGATCCAGCGTGGGGCCGGCGAAGG 238473 29 100.0 32 ............................. CCTGCCTGCTTGAGCATGCGAAACGCGCGATT 238534 29 100.0 32 ............................. CGCAACGGCGGCGGGCGCCCCCCGGATCCGGG 238595 29 100.0 32 ............................. ACTTGAGCGAGCGTGATGGGAGCGGCTGCATG 238656 29 100.0 32 ............................. TGGTGCGGCCGCGTGATGGCCGGCTTGTACCG 238717 29 100.0 32 ............................. CTAGCCTCCATCTCCAAAGGGCCCGTCCCCGA 238778 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 CTGCTCCCCGCACGCGCGGGGATGACCCC # Left flank : TCATGCTCCAGTCGGACCACGACCTGATGGTCGCCTCCGGCCGGAACCACGCCGACGAGGTGACCTGGTGACGGTGATCGTGCTGACCCAATGCCCGGTCGGCCTGCGCGGCTTCCTGACGCGGTGGCTGCTGGAAATCTCCCCGGGCGTCTTCATCGGAGGGCCGTCCGCCCGGATCAGGGCGGCGCTGTGGGCGGAGGTGAAGCAGTACGCGGGCATCGGCCGGGCCCTGCTCGCGTACAACACGGACAACGAACAGGGCTTCGCTTTCGAGACGCACGACCACAAGTGGCACCCGGTCGACCTTGAGGGCCTGACCCTGATCCACCGCCCGAGCGCCCGCACCACACGGCAACCCCAGCCCCAGCCGGGCTGGAGCAAGGCATCGAAACGCCGCCGCTTTGGCGGCGGCCGATAGGACGGCAATGCCCCGAAAGTCGCAATCCTTGCAAGTGAGTTAAACGAGCCGTGCCCCTCCGAAAACCCGCAGCTCACGTAGC # Right flank : CCGAATGCCTGGGGGGGGCCTCCCCCTGAGTGGTGGACACGCTGATACTGGATCTGCTTGATCCGGAGGAAGCGAGAAGACCGCCGATGGCGATGAAGGACTACTCGGACGAGTTCAAGGCCGATGCCGTGGCCCTGTACGAGTCCACGCCCGGGGCGACGTACAAGAGCATCGCCGCCGACCTGGGTATCAACCGGGCTACCTTGCGTGAGTGGGTGCTGCGGGACCGCGAACGCCGCGGTGCCGCCGCCCCCTCTGCGGGCGGGACGCCGGCGGCCCAGGCCGGGCAGACGGCATCGTCCGCCGATCCGGACGAGCGGATCCGGCAGCTGGAGGCCCGGGTGGCCGAACTCGAAGCGAGCGAACGGAAGCTGGCGACCGAGCGGGACATACTCCGCAAGGCGGCCAAGTATTTCGCCGGGGAGACCAACTGGTGAGTCGCTTCCAGTTCGTCGCCGACCACCGGGACGCCTACGGCGTGAAGCGGCTGTGCGAGGTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 240192-241074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030864.1 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 240192 29 100.0 32 ............................. TGCACAAGATCAGTCATGGTTTCCATCTTCCT 240253 29 100.0 32 ............................. ACCACGGAGCCCCGCCCGGTCCATCCCGGGCG 240314 29 100.0 32 ............................. GCGGCGTCGAACGCTTGCTGCGGGGACGCGCA 240375 29 100.0 32 ............................. TCGGTCACGGTGGTCGTGGAGCGCGCTGACGG 240436 29 100.0 33 ............................. CCACTGGGAACGCGCCATCGAGTCCCACGCCGC 240498 29 100.0 32 ............................. CACTGGGAACGCGCCATCGAGTCCCACGCCGC 240559 29 100.0 31 ............................. CGCCTGGAGAAGCTGTTGGGGGGGCCGCCCA 240619 29 100.0 32 ............................. TCGCAGCAGGCGTTGGCGTGGCTGTCCACGCG 240680 29 100.0 32 ............................. GAGCAGGCTCCCAGCGCGGCGGACCGAGCCCA 240741 29 100.0 32 ............................. AGGCGGTCCTGCACGCCCTGCTGAAGCGCCTT 240802 29 100.0 32 ............................. GCGCCGTGGACCCAGACACCGGGTGGGCCCCG 240863 29 100.0 32 ............................. GTGGCCGTGCACCGGGTGCCGGTGCTGGCCGA 240924 29 96.6 32 .........A................... CTGACCAACATCGCCAAGGCGGTCCGGACCGA 240985 29 100.0 32 ............................. CGCACTACCGAGGACGTCACGATCTACGTGAC 241046 29 79.3 0 ........A.A.AA..........GT... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.4 32 CTGCTCCCCGCACGCGCGGGGATGACCCC # Left flank : ACCGTGCTGGACTGCTTCAGCCGCAAGGTCGTCGGCTGGTCCATCGCCGACCACATGCGCACCGGCCTGGTCGCCGACGCACTGCAGATGGCGGCCTCGACCCGCGGCGGCCTGGACGGCGCCGTGTTCCACTCCGACCACGGGGCCCAATACGGCTCCCGGGCCTTCGCCGACCTCTGCGACCAACTCGGCGTGACCCGGTCGATGGGTTCGGTCGGCACCAGCGCGGACAACGCGGCCTGCGAGAGTTTCCACGCGTCCCTCAAACGCGAGACCCTCCAGGGCGCCCGCGACTACGGCGACGCCGGCACCTGCAGAAGGACGGTATTTGCCTGGCTGGCCCGCTACAACACCCGCCGTCGGCACTCCGCCAACGGCCACCTCAGCCCCAACGAATACGAACGCCGACACCACGCGGCTAAGCTCACGCTCGCTGCGTGATCAACGACGCGTGTCCACCATCACGGGGGAAGGCCCGGGCTCCCGTACCCCGAGTGCAA # Right flank : CTCGGGCGCCGGCCCGGAGAGGGCTGGTGTTCAAGACAACCTGCGGGGTAGGGGCGGCGGGGGCTGGGGTCCTGGTTCGGCCTGCGCTTTGATGGGCTGGGCGTTCAGGATGTGGGTGCTTCCCGGCGCTTTGGGCGGACGGTGCCGGGGTTGAGACGGGGTGGTTGCTGCCGACTCCGTCAGGCGGGCCGTTGCGATGCGGAGGAGGAGGTTTGCTGCCGCCGTGCGGCAGAACGGGGTGTTCGGGGTGGGTGGGTTGGCCCAGTAGAGCGGGCGAGTGGGGGTTGCGCGGTCGTGGGCGGGGTGCGGGACGCCGAGTTGGGTGTTGGTGCCGAGGCATTCGGCGTGGTGTTGGTGGGTGCGGTTCCAGCGGGTTCGGGTGCCGGGGGCGACCAAGAGGTAGTAGTTGCCGCCGCGGGGGTCGTGGATGATCGGGCCCTCCAGGGCGTCCGCGAAGGCCAGGTTTACGACGGTCGTCGTGGTGCAGCCGACTGCTGCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 323925-323103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030864.1 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 323924 29 96.6 32 ............................T CTCCAGCCGGCTCGGGCGCCTGCGCGAGATTG 323863 29 100.0 32 ............................. GCGGCGTCCTTCTCTCCGGCGCCGGGAGCCGT 323802 29 100.0 32 ............................. GTCTACGACGCCCGCGCGCAGCTCTCGGATGC 323741 29 96.6 32 ............................C ACCGCGTCCGCCACGTCGGCAGCTTCGCGGTC 323680 29 100.0 32 ............................. GGCAAGGCGGTCGGCGGCAAGGCGCTGCGGGG 323619 29 100.0 32 ............................. CGAGGAGGGGCCGTCGTCGTTGAGGTAGAGCG 323558 29 100.0 32 ............................. GCTCCATCGGATGAGCGAAGCGGCCCCCGCCC 323497 29 100.0 32 ............................. CCAGCTCGGCGGACTCGCCCGCCGCCCGCCAC 323436 29 100.0 32 ............................. GCCGATCCTCCTCGCAGGGCGCTCGCCCGGAG 323375 29 93.1 32 .......................A....C TGCTGGGGCCCCCGGTTCGCGAAGGCCGCCCG 323314 29 100.0 32 ............................. ATCGTCATCGCCGTGCTAACACAGGCAGGCTC 323253 29 96.6 32 ..............T.............. ATCTCCTACTACCGCAACCTCCACGCCGGCAC 323192 29 100.0 32 ............................. GTGTCGGCGGCGGCGGCCAGGGGCCGGTCGAC 323131 29 89.7 0 ...........GGG............... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTGGACCCCGCACCCGCGGGGATGCTCCG # Left flank : CCCGAAGGCACCGACTCCGAGGACCACGAAGCAAACCTCCTGTGGGACGAACACCTCGGCACCGTCCCCGGCGGCACCAACTACGCCGCCCACGCCGACCTCTCGCCACACGGCATGACCGACAACCACATCGCGGTCATCGGCCCCGACCCCGACGAGCCCGATCCCACACCATGACCGTCATCATCCTCATCGCCGCACCCGAAGGCCTCCGAGGACACCTCACCCGCTGGATGGTGGAAGCGAGCGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGAACTCCTCGCCACCAGAATCGGCGACGGCCAGGCCATCCTCATCGAACCCGCGGCCAACGAACAAGGCTGGGCCGTTCGCACTGCAGGACGCGAACGCTGGCAGCCGGTCGACTTCGACGGCCTCATCCTCTCCGCCAGACCCAAAACCCAACCAAATGAAAACAGCCACCGACCCCGATAGAACCCCAGCTCAATAAGC # Right flank : CTGGGTCAGCTGAGGAGGGTGGCGGACGGGCTGCTTCCGTAGCGGCGGCGGTACGCGGCCGCGAAGCGGCCGGTGTGGGCGAAGCCCCAGCGCGCGGCGACCGCCGAGACGGTGGCTCCCGTCGAGGGGTCGGCTGCTGCCAGGTCGGCGTGCGCGGCTGCCAGGCGCACGGCACGCAAGTACGCCAGCGGGGTCGTACCTGCGTGCCGGGAGAAGGCGTATTGCAGGGCCCGCGGGGTGACGCGGGCGGCGGCGGAGATGTCGGCGAGGGAGATGTCGCGGTCGGCGTTGTCCTCGATGAACGCGATGGCGCGGCGGAGAGTTCCCGTCCCGGAGTCCCGGCCGTCGACGGGCGCCGGGCCCGGGCTGCCGCCCGGCCCGTGGCCCTCGGGGCCGAGGGTGCTGGGCAGCGTGGCCAAAGCGGTGGCGGCGAGGAGTTGCGCGGCGCTGCCCAGCATCAGTTCGGTCCGCAGCTGCCGGGGCAGCGCGGCGAGGTGGGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGACCCCGCACCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 335905-334087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030864.1 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 335904 29 93.1 32 ..G...........T.............. AACAGGTCCGCCAGGCCGCCGCCGAGTTCAAC 335843 29 93.1 32 ..G...........T.............. CGGCCCTCACGGACACGTCATCCCGGCGGCGC 335782 29 93.1 32 ..G...........T.............. GGGTCTCTGGCGGGCGAGCTGGGTGTGGCTGC 335721 29 89.7 32 ..G...........T.............T GCGCCCCCACTGCGGCGGCAGCGGGGGCGTCT 335660 29 93.1 32 ..G...........T.............. CTGATGAGCGGCGTGGGGGGTGGCCGGGCGCC 335599 29 93.1 32 ..G...........T.............. GCGATGCGCACGGGTGCGGGCGCACGTACCCA 335538 29 93.1 32 ..G...........T.............. GAGACCGCGTGCCGCGCGCTATCGTGCGCGCC 335477 29 100.0 32 ............................. GCCATGCCGGTGGCGCCGATGCTGATCTGCGC 335416 29 100.0 32 ............................. GATGGGGATCCGGCTGAGGGAACGGGCACGGC 335355 29 100.0 32 ............................. GGGAAGATCGAGGCGGCCGATCTGGTCGTTCT 335294 29 100.0 32 ............................. TTCGGCCAGGTGTTCACCGGCCACATGGGCAA 335233 29 93.1 32 ...........T.............C... GGCCAGGGTGCCCCCGCCGCCGCTCCCGTGCA 335172 29 100.0 32 ............................. CCCTCGGCGACGCCCTGTTCGAGCTGCGCCGC 335111 29 96.6 32 ............................T CGCCAAGGGAGACAGGGCAGCCCCCGTTTCGT 335050 29 96.6 32 .......................A..... AGCCAGTATCCGTACTCCGGGAACCCGTCCAC 334989 29 100.0 32 ............................. CAGGCCCGGCTCGCGGCCGCTCCCCTCCCGAC 334928 29 100.0 32 ............................. TGCCACGACCGCTGCGCAGTTGCGCGCTACCG 334867 29 96.6 32 ............................C GTGGTGTCGATCCCGGTGACGGTGCCCGCGGT 334806 29 96.6 32 ...................A......... GTGGCACGTAAGACGGACCCAGTGGACGCGTA 334745 29 100.0 33 ............................. TACGACGGATGCTGACCCACTGACCCCCGCCGC 334683 29 100.0 32 ............................. CAGGCCCGGCTCGCGGCCGCTCCCCTCCCGAC 334622 29 100.0 32 ............................. TGCCACGACCGCTGCGCAGTTGCGCGCTACCG 334561 29 96.6 32 ............................C GTGGTGTCGATCCCGGTGACGGTGCCCGCGGT 334500 29 96.6 32 ...................A......... GTGGCACGTAAGACGGACCCAGTGGACGCGTA 334439 29 100.0 33 ............................. TACGACGGATGCTGACCCACTGACCCCCGCCGC 334377 29 100.0 32 ............................. AAGGCCGTCCGTCACGCCGAGCCGCCGTCGGC 334316 29 100.0 32 ............................. TTCGGCCAGGTGTTCACCGGCCACATGGGCAA 334255 29 96.6 32 ...........T................. GGCCAGGGTGCCCCCGCCGCCGCTCCCGTGCA 334194 29 96.6 51 ........T.................... TGGCTGAGCAAGTTGCGCTGGAGGCCCTGTACGTCAACGGTCGTCGACCTG 334114 28 82.8 0 C..........AC-.......C....... | ========== ====== ====== ====== ============================= =================================================== ================== 30 29 96.6 33 GTCGACCCCGCGGGCGCGGGGATGCTCCG # Left flank : CGGCATCCCCGGCGAGCAGGTGTCATCCATGACACCGTCGATCCACAGACTCCTGACGATCAATACCGCCGGGCTCACGGCCGACGACGAGCTGCTGATGCCCGTGGCGGCCTGGGCCGCCGGGCTGGAGAAGGCCGGGCGGTGTCTCGCCGACGCCCATGACCACGGCCGACTCACCCTCGGCCTACGGAGCATCCTTTCTCGCCACATCATCTTCCACTGGAACCGCATGGGGTTCACCACACGACAACAGGCGATCTGGGCACGCGCGGCACGCGCCACCATCCTCGGCGAATAACGGGCGGGCCACTGAACTACCCGGTGGCGCTGCATGCCGGAGCGGCGCCGCCATAAGCGAGGAGCAGCCGGATAGGCCTGGGCTGTACCGTGTGAGCCATGACGGATGTCACTGTCGAACCGCGGTCATGTTAAGGAAGTGCCGTTTCATGCGACTGAATGAAAACGGCTACCTCAGCTGACATACCCCCAGCTCAGCAAGT # Right flank : GTGAGATCGGGACCGGAAGGTGTTGCAGGGGCGGGCTTCGGAGGGTACTCGCGCCTGCGGGGGTGCCCGTGCTCGAAGTCCACTGGGCCGCCGGAAAGACGTGGACAGCCGCGTGTTGGCTGGCCAGCATGCCAGCGGTCGAGGCGAACCCGAGGAGGGCTGTGGCGGCCCACGCCCTCGGTTTCGCAGGCCCAGCGCTCGTGGGGTCGCTGCGGGTGGGTTCGGACATTTCACGTATTGGCATGCGTGCGTCTGGTTCATCGATCGGTGCTCTGCTTGGCGTTTTCGCAGGTCGCTCGCGTTGTCAGTGTGGCCTTCTAGGGTGTGGTGGCTCTGGACGTGCGGTGGTTGGAGGTCTGGTGGACTTAGGGCGCTTGGGTGGGCGGTACGAGCCTGCTGTCGTGGGGGCTTTGGCCGTGTTGTGGGGGAAGTCGCGGGAGCGGGCAGGGGGTACGACGAGCCTGCTGATGGCGCACCTGCTGGATACCGCCGCGGTTGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGGGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //