Array 1 171528-172287 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXT01000070.1 Akkermansia muciniphila isolate Pig.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171528 36 100.0 30 .................................... AGACAGGGCTGGGGGACAAATACGTGGAGG 171594 36 100.0 30 .................................... AGCACTACAGCATAATATCCAGAGCCAGAG 171660 36 100.0 30 .................................... GTCTTTGTTCCTAATGGAAAGAACACCGTT 171726 36 100.0 30 .................................... CTTCGCATAACACACATAATGCAAAGTCGG 171792 36 100.0 29 .................................... TCATCACTCTTTCCGGCGTTCCCCTCATC 171857 36 100.0 30 .................................... CATTTGACAGGGGAGACTTCCATAAGCTCA 171923 36 100.0 30 .................................... AATATCTAAAATCCTCAAACCTCTACACCG 171989 36 100.0 30 .................................... GGAGGAACCTTCTACCCCTACGGACCTGCT 172055 36 100.0 29 .................................... TTGTGGCGCAGCATGCGCCGCGGCCATTG 172120 36 100.0 30 .................................... GTAGCGCAGGTAGAGCTGACGGATGATCAT 172186 36 100.0 30 .................................... GACTTTGATGCCGAAAATAATGCTTATCAT 172252 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : CAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTTCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 241146-240910 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXT01000070.1 Akkermansia muciniphila isolate Pig.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 241145 31 87.9 34 .........T-..T.-................. CCCCATATATTATCAGCTACAATGGTCATATTAT 241080 33 100.0 37 ................................. CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA 241010 33 100.0 35 ................................. TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC 240942 33 93.9 0 ...........T....................A | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 95.4 36 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGTGCCTCTTCTTTTGTGGAAAACAGAATAAAACGGTTTCCGGGGAGAGTCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCGGGCTTTTTAACGTATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGACGCCCAGGA # Right flank : AGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGATCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGAGGATTTTTCATGTGCCGGGGAATGTATTTTTATCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATAAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTG # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //