Array 1 12283-13469 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFP01000034.1 Pyramidobacter piscolens W5455 contig00251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12283 28 100.0 33 ............................ TCATAGATCGTCTTGTTCGTTGTGGTGAGCCTC 12344 28 100.0 33 ............................ TCCTCGTAGATCACGACGCCGTTGCTGGTCGTG 12405 28 100.0 33 ............................ CGCTTTCCCTGATTGGCGAAGGCGACAGCCCCG 12466 28 100.0 33 ............................ CGAAATGGACGCACTGACCGCGGGGCAAGGGGA 12527 28 100.0 33 ............................ CGCATGATAGTAGCTCGTCATGTCGATGGTGAG 12588 28 100.0 33 ............................ CCCTATCAGGCTATGCGGGACGTTCACCGCCTC 12649 28 100.0 33 ............................ TGAAGTTTGTGCTGTTGCAGGATGGGAGCAGGG 12710 28 100.0 33 ............................ GCCATTCCAGACGCCCCGCTGGCACATCACGTC 12771 28 100.0 33 ............................ TACCGCGCTCTTCCTTCGGGGAGGGCGCGTTTT 12832 28 100.0 33 ............................ CTCTTACTTCGCGCAGGGCCCCCAGACTCCCAA 12893 28 100.0 33 ............................ CATGGACATTCTTGGACGAAAAACGGACAAAGC 12954 28 100.0 33 ............................ CACGAGTATGAGCGGCTGATCGACCGCCACGAG 13015 28 100.0 33 ............................ CTTGGCGGGCCACTCTTCCCGCCCCGCTTCCAC 13076 28 100.0 33 ............................ CCCCGGACCTCAGATAGACGTGACTCGTATTCG 13137 28 100.0 33 ............................ TACTCGATGATGCTGCTCATGCCCAAGAACCAC 13198 28 100.0 33 ............................ TCCAGTCTGTAAAGCCCAGTGCCGTCAAGGCGA 13259 28 100.0 33 ............................ CTACCAGACGCTGGCCAGAGCCAAGCAGGCAAG 13320 28 100.0 33 ............................ TCCGAAGAACCAGTCTGGATCTCTCGTAGCGAG 13381 28 96.4 33 ...........A................ GGGAAGGGCTGACGGGGCATGCCCGCAGCGTTC 13442 28 89.3 0 ...........A.............G.T | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 33 CAAACCTCCGCTCACGCGGAGATGGACC # Left flank : ATATCCGTATCTCTGCCGATGGACAGCGCGTTTTTTGCCCGCGCTGCAAACATGTTGTTTCCGTCGTAAGAGCGGAGCTCCTTGAGACTCGTTGGCGTTAAAAATATAGGCTCGCCTTGACAGCGAAATGTTATGCGAGAATCGTACGTGGATAGTTGATGAACGCCGTCACGCGTTTGGAAGAAGAAATGGATGACGACAGCTCTAAGTGCAGACGGCCCGTCTTGTAGAAAGAATAGTTGCCCAAATTATGCGGCGGAATATTCAGATAATTTTCAGGACCAGACGACACAGATAACGCACAGTGTCTGTCGATATGAACATCGTGTTTCCGAAGGAAGCCCTCCGATGTGCTTTGCGCAAACAGCGCTGCACTTTTTATATATGTGGTGAATGCTGTTGCTGTCCATGGTGCAGATCTGTGCCCTATCGTACGGCGACCAGGAAATTCCTTGGGAACTGCGTTGAAGAGATAAGTTGAACATGATACACACTGAAGA # Right flank : TCCTAAAAGCGACGGCCGCACGTGCGGCCTAACCCTTCGCACATATCCGCCAGTGGTCGTAAGCTATGACTCATCCTTGAACGTTGACGTTGGCAACAGATGCCCCTGGCAACGGAAGTGGATCCGCAACCGGGGGCAATTATCACAAGCTCATTTTTGTGAACTTCTCGCTGATGTCTGACGTTCAGGGCTGAAATAATCAATTCATAACCGTCGATGAAGCAAATTAGATGATAATCTCTGATTCGATGCCGTTATTGTCCTTTGCGATTGCCTGCAGGCTCTTTCCCATGGATCCTTAGGTCTCCGCATTCAACAAGTTTTTTTGATCCATGACCTGATCATGAGCTACATATATTTGTCGAGTTTTTAACTCCCGGTCGAATTGGGGAATTGTTTAGACGTCGTATCTCATAAAATTGACTTCTTTCCAGAGCCTCTGATCGACCGACTCTTTTTGCCGCTTTTTATGTATTCATCGTAAGCATCTTTGACGACGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAACCTCCGCTCACGCGGAGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 245-1126 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFP01000059.1 Pyramidobacter piscolens W5455 contig00246, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 245 28 100.0 33 ............................ CGTCGGCGGTTCCGGCTCCGGCTCGATCGTCAC 306 28 100.0 33 ............................ TTCTGCGCGGAGATAGTGGACTGTTCGAGCCCG 367 28 100.0 33 ............................ ACCGGCGGCGCTGATATACGGGAGCTGCTGGAA 428 28 100.0 33 ............................ AAGCGGATGTGCGAGCCGTCGTCTTCGCAGCAG 489 28 100.0 33 ............................ CCATCTTGAACGACGCCAACGACTACCGGAAGG 550 28 100.0 33 ............................ AGCGACCTTCGAAAGCATGGTGCGTCCTCCTTA 611 28 100.0 33 ............................ TTGCTCGCTTGCGTCCGTAGTTCTCCCGAATGG 672 28 100.0 33 ............................ ACGTTCTTGTTCTTTGTAAACACGGCGTCCTTA 733 28 100.0 33 ............................ TAAGCCCTATGCCAAAAAGAGGCAACAGAAAGG 794 28 100.0 33 ............................ ACGTAAAGCAGATAATCCTTGCCAACGGTCGCG 855 28 100.0 33 ............................ CCCGACGGACAAGCCTCCGGCACCTGAAAAAAG 916 28 100.0 33 ............................ CCGTCCCAGATCTTCGAGACGGTATTTGTAAGT 977 28 100.0 33 ............................ CGAGCAGATTGCCGAGTTGGAGAACCAACAGAA 1038 28 100.0 33 ............................ TTTTGACCCATCCCGTCGCGTCGCATTGTCGCC 1099 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GGTTCATCCCCGCGTGAGCGGGGTTTTG # Left flank : GGGAATACCTCGATGACCTGCGGCAATATACGCTTTAGCTCGCATACGACATCAATATCGTCTTTACGCCGCTTCCAGAGACGATCCGCTTCTTCAAGCGCGACAAAATACTGCTTAAACATATCAGCCTGTTTTAGTCCTCGAAACATCGAGGATTGAAGCAGGCTGATTTTTTTTTGCAATTTTTCGTCCTGGTTTTGAGCGTCTTTAAGGTATCGCTTGAATCGCTTGTAGTCGCCCGATCG # Right flank : GTCGTCCTGTTGTGCGCTGTTTAGGTCGGCTTAAATTTTCACTTGCAACGTTCTTTATCAACATTGACATTACACAATAGGTTTAGCAGCTCGATATCTGAACAGTTACTATTAGTCATCTGAAGAATGAACAAGGCTATTTTATCAGAATATTCGCACTTGTTATAACGCGACCTCTTGGAATTGTTTCCTTTGTTCCTCTGTTTCCCTGTCGCTGAGGCGGCTCAGGAGGACTCCGTCACAGTCAAGAACGATTCGTGCAGGCAATCCAAGACATTCTATGCCTTGCCCGCCAGGTCGGGATGAATCGCTCCATATAAGCATAATGGAACTATTTAGATCCTGTTGTTCGTTGTACCACTTTTCGATGACCTGCCATATTCTCTGGCGGATTCCCGCCGACATCTTGGGGTGACTGTATACGCCCGGAGCCAGTTCCAGCATGCAAGAAGCGAGAAAACCGCGATATTTCATGGGAACGTTGTTAGTGATCACGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCATCCCCGCGTGAGCGGGGTTTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 31808-32423 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFP01000059.1 Pyramidobacter piscolens W5455 contig00246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 31808 31 100.0 34 ............................... CATGTGTCTGGCCTGCCACAACCGCAAGACGGCG 31873 31 100.0 35 ............................... TTCCGCAGCGCCACGCCCTACGAGATCATGCACAT 31939 31 100.0 33 ............................... TTTTGAGATGCTTACAGTATAACACAAAATGTA 32003 31 100.0 34 ............................... TTTTTTTGACCCCGCGATCAGCGGCTTGATCGTA 32068 31 100.0 35 ............................... GGTTTTACGTCGACGCGGCGCGTGCAGCAGCTCGT 32134 31 100.0 33 ............................... AAGGACAACGAAGGCAACTACCTGTGGCAGCCC 32198 31 100.0 33 ............................... TGCACGCCAACAGGGCGCTCACGATCGATCTCG 32262 31 100.0 34 ............................... CGAATCGACGGCCGCATGTCTGACCCGCAACCAC 32327 31 100.0 35 ............................... CGGGCAGATCGTCGCCACCGGCGTCACGCAGACGG 32393 31 90.3 0 ..........................T..CT | ========== ====== ====== ====== =============================== =================================== ================== 10 31 99.0 34 GTCGCGCCCTCACGGGCGCGCGAATTGAAAG # Left flank : CGTATGACGTCAGCACCGACAGCGCTGGCGGGGCGAAACGCCTGCGCCGCGTCGCCAGGTTGTGCGAGAATCACGGCGCCCGCGTCCAGTTCTCCGTGTTCGAATGCAAACTCGATTGGGCCCAGTGGATCACCCTGAAAGCCCAGCTGATCGCCCAAATCGATCCGGAAGTGGACAGCCTGCGCTTTTACCTTCTGGGCAACAACTGGGAAAAACGAGTGGAACACATAGGCGCGAAAAAAAGTTACAACCCGGAATCGGCGCTGATCCTGTGAGCGCGAAGCCCAAGCGCGCAAAAATCAGCGCTCCGGCAAACGCACGTCGAACCATCCAGCTGCGAAGAAAATTCGTCATACGTTCCCTAGGCCGCCGCGGTTAATGGGAACACGGAAAAATCCTCGTAAGATACACTGTAAAAGCCACAAGGAAATGAAGCTTGCGACGGACTCCGCGGGAGCATTTCGAGAAAGCGGAGAAATACCCGTCTCAAACGTACCACT # Right flank : TGGGCTGATTTACTAGCTGTGATGAATTTCTGCTGTTCAAGCGTCTTTTGTGGATCTTTTGCGTTTCACCCGATCGGGCGATGTGGAATGGTGGCGAGTAGGGTATCATATGATTATGAAAGATCGTTGGCGGCGGCGAGATTGGCCTGATTGGCCTGATTGGCAACCGCAAGCTGGCGGGCGGTGATCTGTGCAAGAAGTGCGCCCAGAAACTTTCGCCAGTGCGCACGCTGTTGCGAAATGCACGCGCTGATCCAGTCTCTGCTGGGCACATCGCGAGCGGATCATAAAAATAAAAACTAAACGGCCGGCCCCGCCGGCACCAAAGGAGAGATGAGAATGGCAATTTACTGCACATCCTGCGGGAAGAAGTTCGAAAGCGACGAGCAGCACTTCTGCCCCTACTGCGGCGCGACCCGCCCCGTCGAACAGCCCAAAACCGTCGTGAAGACGCCGCTGCAGGTCGATCCCAAGCGCGTGCGCGTTGACGAAACCGCCGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGCGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //