Array 1 44761-45234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKU01000034.1 Salmonella enterica strain BCW_5098 NODE_34_length_50022_cov_14.003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 44761 29 100.0 32 ............................. ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT 44822 29 100.0 51 ............................. TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG 44902 29 100.0 32 ............................. GAGTTTATTTCCCATCCCTAACAGCCGGTTAA 44963 29 100.0 32 ............................. GCTTACGAAGTTCTTTACCTGTACTTGGCGCA 45024 29 100.0 32 ............................. ACGTGGCGCGGGATCATACCGTGGGATAAAAC 45085 29 100.0 32 ............................. CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA 45146 29 100.0 32 ............................. CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA 45207 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= =================================================== ================== 8 29 99.1 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTCACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGTATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4416-5360 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKU01000114.1 Salmonella enterica strain BCW_5098 NODE_114_length_5426_cov_5.22249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4416 29 100.0 32 ............................. AAACATCCGATCAAATACTGCGTTCGTTTGAG 4477 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 4538 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 4599 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 4660 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 4721 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 4782 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 4843 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 4904 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 4965 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 5026 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 5087 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 5148 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 5209 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 5270 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 5331 29 96.6 0 ............T................ | A [5358] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107-684 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKU01000189.1 Salmonella enterica strain BCW_5098 NODE_189_length_723_cov_3.93114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107 29 100.0 32 ............................. GCTATGTAGCTAACCTATTGATTTTATAAGAA 168 29 100.0 32 ............................. TGGCGCAGCAACCAGATCCCGCTAACGAACCC 229 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 290 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 351 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 412 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 473 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 534 29 100.0 32 ............................. CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 595 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 656 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCGGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGTG # Right flank : CGTTTTTTTTATTTGTACTATTGTCAGTACCCGTGTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //