Array 1 462-1406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRL01000032.1 Leptospira santarosai strain 56274 Contig032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 462 29 100.0 32 ............................. AAAACGTAACCGAAGCAAACGCGCTTAACAAA 523 29 100.0 32 ............................. AGGGAAACAATCCTCCTTCTTCCGATCCCCCA 584 29 100.0 32 ............................. AAAAAAGTCCGCCCGATTGCGGTTCCTCTTTT 645 29 100.0 32 ............................. CGGAGAATTGATCGCTCTGAAATTGTTTTCTG 706 29 100.0 32 ............................. AAGGGGGATTCAAGGTCTCCTATTCCGAACCA 767 29 100.0 33 ............................. AGAAGAGGATAATCTCTCGTTCTAAAGCAATTA 829 29 100.0 32 ............................. AATTGCACGAATTTTTTCAAATGCTTGATGAA 890 29 100.0 32 ............................. CGAAGCATTCTCTTTTCCGAAACGTTGCTCAG 951 29 100.0 32 ............................. AACTGGAGAGAGAAGGCCCCATTCAACCGGAA 1012 29 100.0 32 ............................. AACTGGAGAGAGAAGGCCCCATTCAACCGGAA 1073 29 100.0 32 ............................. ACTTCCTTCGTCGCGGTTGGACTCCAAGACGT 1134 29 100.0 32 ............................. GATGAGTTCGGAAAACGCGTAGAGGTTCGTGA 1195 29 100.0 32 ............................. ACCTTGCATTGCCTATTTCTTTCTTAAGAACT 1256 29 100.0 32 ............................. GGAATCAGGTGATTTTGAAATGAGTGGACTTT 1317 29 100.0 32 ............................. CGATCGAATGGGAAACGTCGTTCGCAACACAG 1378 29 75.9 0 .....................GCATTT.A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CATTCATTTTAAATCCAAAACCTGAAAACGTGGGAGTTCCCACAAATTACGTCTCTTTACCGATTTGAAAGAATTTTTTACAATGAAGTTTGTGTATGGAGGCGACAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTACCACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTTTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAGCC # Right flank : ATTACCAAGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATAAGACGGTATAAGGAAAACGAGATATCCAAATCCTATTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCGACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAATTCCTTCAAATCCATAGCCGGGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCCGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 12593-12075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRL01000033.1 Leptospira santarosai strain 56274 Contig033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12592 29 100.0 32 ............................. CGATACCGCAAGCACTGGAAGCGTAAACAGTA 12531 29 100.0 32 ............................. AAGATTGTAAATTACTAATTGAATATCTGAAA 12470 29 100.0 32 ............................. TGGCAGAACAGCCATTGCTGTTCAATCGGAAC 12409 29 100.0 32 ............................. CCAATATTAATTTCTCTTAAAACTTCGCTGAG 12348 29 100.0 33 ............................. GAGCGGAGCCTAAGCGAAAAGATCAAAACCGCG 12286 29 100.0 32 ............................. AAGAAAGTCGTAATGATCTTCGAGGAGAGTCA 12225 29 93.1 31 ...G..T...................... GACGAGACGCTTACCCGTTTGGGGAATTCGG T [12204] 12164 29 100.0 32 ............................. GAGACTTCAGCGATAACCTGGTTCATGATTAA 12103 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CCATTCCCGAGAAACGGAATCTTGCGTATCGACAATAATTTTTTTTATACTCGCTCGGACGAAATTTTATAAGCGATAAAAATACGAAGTTTCTTTGAATCCTAAAACGGAAAAAACCTCATGACGGAATTTTTTCTCAGAATCCTCGTCTCCACTCGCAATCCGGTCGCCCGCACAAGTTAAAAATTTATAGTTCCAAGTCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAATCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGCCCTATACAAATTTTTAGT # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTACATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATCTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 10207-9814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRL01000047.1 Leptospira santarosai strain 56274 Contig047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10206 29 100.0 31 ............................. AAATATAGAGCCACTTGTTAAAGAGATAATC 10146 29 100.0 32 ............................. CGACTTGGAATAATCCTCCGGTTTCTGATTGG 10085 29 100.0 31 ............................. TAAAAGGTTCGGTAACGAGTCAGCACATGGC 10025 29 100.0 32 ............................. GCGGATTCCGAAATGATATAGAATATTTTGGG 9964 29 100.0 32 ............................. AAAGATTCCGGATTCCAAAAGAAATTGATCAT 9903 29 100.0 32 ............................. AAATTATCCATGTATAACACCTGGAAACGAGC 9842 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCTAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAGATATACTTCTTAAAATTCCTATACAAGTTTTTAGC # Right flank : AATGAGCAAATTTCCCACGCGTGGGAAATTTCCTTTTCCCCGGTTGAATCGCTTTCCCACCATACGTAGTCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCAGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGATTTATTAGAAAAGTATAATTTTCATGAAGGCGACACCGTATTTCTATTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //