Array 1 427199-428324 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDW01000001.1 Salmonella enterica strain BCW_2649 NODE_1_length_553012_cov_3.57218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427199 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427260 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427321 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427382 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 427443 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 427504 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 427565 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 427626 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 427687 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 427748 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 427809 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 427870 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 427931 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 427992 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428053 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428114 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 428175 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428236 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428297 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444583-446627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDW01000001.1 Salmonella enterica strain BCW_2649 NODE_1_length_553012_cov_3.57218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 444583 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 444644 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 444705 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 444766 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 444828 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 444889 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 444950 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445011 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445072 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445133 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 445194 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445255 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445316 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445377 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 445438 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 445499 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 445561 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 445622 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 445683 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 445744 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 445805 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 445866 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 445927 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 445988 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446049 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446110 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446171 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446232 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446293 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 446354 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 446415 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 446476 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 446537 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 446598 29 89.7 0 A...........TC............... | A [446624] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //