Array 1 3313-3013 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000022.1 Capnocytophaga stomatis strain 11021B-1 sequence22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3312 36 100.0 30 .................................... AATTCCGTATTAAATTCCTTACATAGATTT 3246 36 100.0 30 .................................... AAAAAAGATTTAGAGCATATACCTCTATCG 3180 36 100.0 30 .................................... ATCACGATTATTTTTCCAAAGAACAGGCTA 3114 36 100.0 30 .................................... TACGCTCAACTACTTAATGACGTAGCAACG 3048 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TTTAAAGGTTTTAACGGAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAACCACCCGCAACGGGATAGCCTCTTTTTTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGAAAAAATCGCTGAAATCATCTCTCGTAAGGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGAGCAGTTCCAACTCGTACGCACCGATATTTAATGGGTTTTA # Right flank : CTCAATGCTAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCCTATATTTTACTTCATCAGTGCTTCTTTTTCCTTTTTAAATACCGCGGCAAAGTACTCGGCATAGGTTTTTTCTTTTTCTATCTTGCCATATTTTTCTTGGCAATAGTTCCAAAATTCTTTTTTAGGCAATTGGTTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAGGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGTTAATGTCCACATCTTCAGGTTCAGTATTTAAGTTGAATACCTTATAGCTCTCCACATCTTCATTTTTAAGTTGCTTTAAAAGTCCGTTGAGAATGTAGTATTTGAAATTTTGATTACCCTCTTTTTTTAATATTTCCTTATCTTTTACCTTTTCCAAAATATACTCCTCTATAAGATGGACTTCCTTCAGCAGTTCTTCCCTTCTTACTTTTTCATATTGTTCTATTTCTCTTTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3612-3444 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000022.1 Capnocytophaga stomatis strain 11021B-1 sequence22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3611 36 100.0 30 .................................... AACCACCCGCAACGGGATAGCCTCTTTTTT 3545 36 100.0 30 .................................... GAAAAAATCGCTGAAATCATCTCTCGTAAG 3479 36 50.0 0 ..................NNNNNNNNNNNNNNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 83.3 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TTTAAAGGTTTTAACGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGAGCAGTTCCAACTCGTACGCACCGATATTTAATGGGTTTTACGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAATTCCGTATTAAATTCCTTACATAGATTTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAAAAAGATTTAGAGCATATACCTCTATCGGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACATCACGATTATTTTTCCAAAGAACAGGCTAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTACGCTCAACTACTTAATGACGTAGCAACGGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACCTCAATGCTAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCCTATATTTTACTTCATCA # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 374361-375090 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000005.1 Capnocytophaga stomatis strain 11021B-1 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 374361 37 100.0 40 ..................................... TTTAAAATGATAATCTCGTTCATATCCATCGTTGTAAATT 374438 37 100.0 40 ..................................... TGACAACATCATCAAACGAGGGCTTCAGCCGTTGTAAATT 374515 37 100.0 40 ..................................... GGAAGTCACTCGCATAATTATGGAGATATTGTTGTAAATT 374592 37 100.0 40 ..................................... TGCGTGGTTTTGCGATTTTCTCGTGGTTTTGTTGTAAATT 374669 37 100.0 40 ..................................... GTATTTTTCACGTTCGTATTCTTCTTTGCTGTTGTAAATT 374746 37 100.0 40 ..................................... ATTTTCAATCTCATAAAAAGAAGCATCTTTGTTGTGACAA 374823 37 94.6 40 .......................C....A........ AGGAGAATGATATAGTTAAGATAGCTTACAGTTGTGACAA 374900 37 94.6 40 .......................C....A........ CCTAAAAGAATATCAAGCGATTTTACAAGTGTTGTGACAA 374977 37 94.6 40 .......................C....A........ CCATAGTTACCACGAATAATCATCGTCTAAGTTGTGACAA 375054 37 94.6 0 .......................C....A........ | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 97.8 40 GCTTTCAAATTTTCGTAACTTTGTGATTGGTTACAAC # Left flank : TCATCAAAAAAACATAATTTTTCCTCTAAAAATTGATACAAATCAGGTTCTGCATACTCATTAGCACAGGCAAAAGAACAAATTTCGGCTAAGAACATTGTTACGGAACTTTTGTAAATATCTGTGTGTATGGACTGATAAACTTTGGTTACTTTTGCTTCCTTGATGCGTTCCAAAGAGGCTGTGTTTCTGTTACTTGCCACCAATTCCAGTTGCATAAAAGGCTGAAAAAGAGCTGGTTTTAATGTTGTTTTTTTTGAGGATAAAACGCCTTGAAGCAAGTACGAACGAACACCCAAATCTTCGGTAAAACATTTAACTATCAAGCTATTATCTCCATATTTCAAAGCTGAAATTACAATTGCCTTAGTTGTTGAATACATTTTTCTACATTTTTTAAATCTGTGCCTTTCCGATTATTTTTAACGAAAATACAAATTCCCCACCAAAACTACGCGAAGATATAAAGTATTTGTAGATTGACAAAAATTATTGTAACG # Right flank : CACAGCAGTATCCCAAATGATGCCTTTTGAAGTTGTGACAAGCTTTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGATTAGTTACAACTACCAAAATCTTTATGAGCCAGACAGATAAGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACAACAAGGGACAAGAGCCAAGTAACAAGGATGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACCATTCTTGCCTCATCATAAGGAAAGTTCCCGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACAAAATAGGTATTCAATATGCAGACCAAGATGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACAGGCTGGAAGAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCAAATTTTCGTAACTTTGTGATTGGTTACAAC # Alternate repeat : GCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 376883-377700 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000005.1 Capnocytophaga stomatis strain 11021B-1 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 376883 47 100.0 30 ............................................... TATCTGTATTAAAGACTCAATGGGATAGCA 376960 47 100.0 30 ............................................... CCTAATGGCTCAGTTGTATTAATTAAAAAG 377037 47 100.0 30 ............................................... TTGCCTATTTATTATAGTGGAATTGTATTT 377114 47 100.0 31 ............................................... CTATAAGAGTCAAAGTCTTCTACATCGAGGG 377192 47 100.0 30 ............................................... TAAAGCACCCGTGTCTCCTACTTCGTAGTA 377269 47 100.0 30 ............................................... AAATCAATGCTATGCAAAATACATTAAACT 377346 47 100.0 30 ............................................... TTCATTTCTTTTTTGGTTTTCTCCATATCT 377423 47 100.0 30 ............................................... TTTGCTTCACTCTCAATCATCTCCTTTTAG 377500 47 100.0 30 ............................................... TGCTTTTCTCTTTCTAATGAGTTAGTGTAT 377577 47 100.0 30 ............................................... AGCCGCCACGATCATTGCGGGTGTATTCGT 377654 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 11 47 100.0 30 GTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAAC # Left flank : ACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACTGCGAGAAATGATGCAGTCACCGGCATTTAGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACGAATTTCAGGTTTAGACGAGGTCTATGTTAGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACTTGGCTATGCTTCAAACCGTTGGCTTACCTGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACTAGTACACCCTTTGTAAACTGTCTCAGTTTGTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAACGAAATCGAAAAATACAATCCTGACACCCACGTTGTGACAAGCTTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGATTAGTTACAACTAATATGATTCTCAGGTACACCCTTTTCAC # Right flank : CCTCAAAAAATAATCCTCTGTTTGTCAGAGGATTATTTTTATTTTTAGAAATAAAAAATTGAGCAAAAAAAGAATAAATCGGGCTGAGTAAATCCATTTTTTTCATTCTATTTCTAAAATAACTCGAGCTGCTGGTAAGTAGGTGGCGGATCTTCGCGTACTTTAGAATGAAATATTTCCATATCACCAAACTGCTTATCTGTAATCGTCATTACGGCTACTTTCCCATATTTGGGAAGCATCATTTTTACTCGTTTTTTATGCACTTCTGCATTTTCTCTACTCGGACAGTGCCTCAAATAGATAGAAAACTGAAATAAAGAAAATCCATCATCTTCCAAGCGTTTTCGGAAGAGATTGGCTGCTTTTTGCATTGCCTTGGTCTCGGTTGGCAAATCGTATAAAACCATTACCCACATAATTCTATAAGCGTTAAATCGTTCGGAATTCATAACATTTTAGGATAAGAAATTTGTCTTTTTTCGCCCGTATAGCATTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGACAAGCTTTCAAATTTTCGTAACTTTGCGATTAGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 613-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000009.1 Capnocytophaga stomatis strain 11021B-1 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 612 36 100.0 30 .................................... ACGTCCAATTTCGGGTTACCCAATGTTTCT 546 36 100.0 30 .................................... AAACAGTCGATAGTTTAAAGGATTGTAACG 480 36 100.0 30 .................................... ATACAGGTGTGGATTTCATTGTAGAACTTC 414 36 100.0 30 .................................... GAGTTATCTGAACAAAGCAGACAACTATAC 348 36 100.0 30 .................................... TAATAACATAATAAGTAAAGTGAACATATA 282 36 100.0 30 .................................... TGCTATGGAAGATGACGCTTACCTGTGTTT 216 36 100.0 30 .................................... TGGAATTGTATTCAAAAGTAAGAGAACTTA 150 36 100.0 30 .................................... GATTACAAAATTTGCACGGAGCATTTTTAC 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TAGCGGTTAATGGTTCAGAAAAACCTGAAGGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTCCTACCATTGCTGTGTAGGTGAAGAATCTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACTTACTTGCAAAACAAAAAAGGACGGACGTTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAACAAGTTTCTCAGCTTCGGTTCATCTTAGGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAATAGTACCATCAACTAATTCTTCCCATTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACATTTCCTCTGTTGAAAATGATAAGTTTTTT # Right flank : CTCGAACCAAAATTTTATAAACATAACATTAGTTGTGATTACCCTCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1677-805 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQF01000009.1 Capnocytophaga stomatis strain 11021B-1 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 1676 35 72.2 83 ..............T....-..CTT...T.CAT..G TTCCTTTGAAAAAACAAATAAAATTTCACGAATAAAATGAGAGCAGTTCCAACGCTTGGTGTAAACCATACACAAATGACCCT 1558 36 100.0 30 .................................... GTTAGCTTCTGTAGAAGCACAGATTAGAAA 1492 36 69.4 83 ...................TGCT.T...T.CATG.G TTCCTTTGAAAAACAAATAAAAAACTCACGAATAAAATGAGAGCAGTTCCAACGGACGAACTTTACGAAATGACTTTCACAGT 1373 36 55.6 57 ....................NNNNNNNNNNNNNNNN NNNNNNNNNNAATGAGAGCAGTTCCAACTTTTAAGAGTTATCAACAACTGAAATATT 1280 36 100.0 30 .................................... ACAGGAGGTTTTAGCATTATTGCCATTGAG 1214 36 100.0 30 .................................... TTTCGAGGAAAAAGATACCATACCTAATGA 1148 36 100.0 30 .................................... TAGCGGTTAATGGTTCAGAAAAACCTGAAG 1082 36 100.0 30 .................................... TCCTACCATTGCTGTGTAGGTGAAGAATCT 1016 36 50.0 74 ..................NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACTTACTTGCAAAACAAAAAAGGACGGACGTT 906 36 100.0 30 .................................... AACAAGTTTCTCAGCTTCGGTTCATCTTAG 840 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 11 36 86.1 48 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : AGGTGCTAAATTAGGTGCTAATATTTATATAAATAAACATAAATACATCATATATTTCTTTATGCAAAAATACATAAAATATCTATAAATAAGATATTTATATAAAATTAATCATATTAAATTTCACTAAGTTCATTTCCCTCTCTCTCCGCAGTAAAGGGTGTAAATCAAGTAGTTACGAGATTTACACCCTTTTTTACACCCAAAAATATCGAATGATTTTTATTCCTTCCTCACATTCTTCATATTTTTTCCCAGATTTATGGTTTTAAATTTTCAGATTGGCTCAGAACTAAGCTTTTGAGTTGGAAACCTCAATTCACACTTCACACAAAACACTAAAAATCAAATAATTAAAAATAAAATTCTTATTAATTTCCGCACGTGTTGTCCCAATAATATAAATTCAAAAACATAATTTGTAACACTTTTTCACACAAAAACAGAAAAATAAAAACCTCCCGATGAAGTACATCGGGAGGTTTTGCGTTAAATAAAAT # Right flank : AAATAGTACCATCAACTAATTCTTCCCATTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACATTTCCTCTGTTGAAAATGATAAGTTTTTTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACACGTCCAATTTCGGGTTACCCAATGTTTCTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAACAGTCGATAGTTTAAAGGATTGTAACGGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACATACAGGTGTGGATTTCATTGTAGAACTTCGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGAGTTATCTGAACAAAGCAGACAACTATACGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTAATAACA # Questionable array : NO Score: 4.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:-1.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //