Array 1 162914-160888 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSML01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162913 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162852 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162791 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162730 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162669 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162608 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162547 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162485 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162424 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162363 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162302 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162241 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162180 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162119 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162058 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161997 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161936 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161875 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161814 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161753 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161692 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161631 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161569 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161466 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161405 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161344 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161283 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161222 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161161 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161100 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161039 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160978 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160917 29 96.6 0 A............................ | A [160890] ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180538-179045 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSML01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180537 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180476 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180415 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180354 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180293 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180232 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180171 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180110 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180049 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179988 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179927 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179866 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179805 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179744 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179683 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179622 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179560 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179499 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179438 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179377 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179316 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179255 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179194 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179133 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179072 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //