Array 1 145354-142214 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQNP01000003.1 Chromobacterium sp. F49 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145353 29 100.0 32 ............................. ATGGCGGCGCAGCGAGCGCGTTCGCGCCGGCG 145292 29 100.0 32 ............................. TCACGACAAAATAGGAAAAAATAATATGCCTA 145231 29 100.0 32 ............................. GCTTACCTTAAATTCTATCGTTTTGGTCCTAT 145170 29 100.0 32 ............................. TGACTACCGAAAATGCGGCGTTTACCGCTGTC 145109 29 100.0 32 ............................. CCGGCAGTCTTTGCTAATTCGCAGCGGGAACG 145048 29 100.0 32 ............................. CTCAGCGAGGTCAACGCACAACTCGCGCTATT 144987 29 100.0 32 ............................. TGGGAAAACAACGTTACCCGCTTCTTCCGCTT 144926 29 100.0 32 ............................. CCCTAGCTAGCCAGAATGGCGCAGGCGCTTTC 144865 29 100.0 32 ............................. GAAATTCCGCGACAGGGCTTCAGATACAATAC 144804 29 100.0 32 ............................. GTTGAGCCGAACGTGCAATATTTTGCAGTTTT 144743 29 96.6 32 ............................T CGAACCGCACGGCTACCAGATGCTAATCATCC 144682 29 100.0 32 ............................. TCCTGGCGCATTTCCAGCGCGGCGAACAGTGG 144621 29 100.0 32 ............................. GAGATTGAGATGTTTGAAGTCACTCTGAAGCA 144560 29 100.0 32 ............................. GCGATTTGCTCTGGAGCGCGCCGAACTCAATG 144499 29 100.0 32 ............................. GGCGCTCCAGGGTGGGGCCGCCCCGTCGTAGA 144438 29 100.0 32 ............................. GCAGCCGACAAACTGTCCAAACTGGACAGTAG 144377 29 100.0 32 ............................. GTCCGCGATTACGCACGACTACAGGCGGCCTA 144316 29 100.0 32 ............................. GCGGAGCGTTGGGCGTCGAATTTTTTCGTTCT 144255 29 100.0 32 ............................. TCAGAGTCAGGAGGCCCGGCTTGCCCGACTCG 144194 29 100.0 32 ............................. CCCCACGTAGTCGCGCCGGCGGGCGCGCTGGA 144133 29 100.0 32 ............................. ATGTGGTTTGGCAATATGATAGCGTGATCACA 144072 29 100.0 32 ............................. ACTTTTTTCAACTTTTAGGTGACTACGTATTT 144011 29 100.0 32 ............................. TCCGACCTCGCCCGGCTACAGCGTGCGTTTCC 143950 29 100.0 32 ............................. CAAGAAGTAGCGCCATGGCCAAGAACTGGATC 143889 29 100.0 32 ............................. CTAAGGAAAACCGGCCGGCTATCTCTGTTATC 143828 29 100.0 32 ............................. TACCAGCGCACCCTATGCTTCTTCACTCTGCG 143767 29 100.0 32 ............................. ATGCGGTGGCCACCGTGAATGCGGTTGTAACC 143706 29 96.6 32 ...........A................. TCATTTCTCGCCCTCGATATTAGCGCTTCCTT 143645 29 100.0 32 ............................. GACCACGCCTCCTGCTGCTTCTCGCTTCGCGT 143584 29 100.0 32 ............................. ACGAAACCGAATCGCGCGTCAGAGCCGTCTTC 143523 29 100.0 33 ............................. GAGCTGAAGAATGGAATTCCCGACGCAACCTAA 143461 29 100.0 32 ............................. GGCGCAGATCCTCGCCCGGTCCACCACGCAAG 143400 29 100.0 32 ............................. ATGGGCATCGGTTACGAGGCCGTCGAGCTGCC 143339 29 100.0 32 ............................. CCGCCTATCAGGACGCGGACACCCAGATGAAT 143278 29 100.0 32 ............................. TTGGGTACCAATCTAGCGCGTCCAATTCCGTG 143217 29 100.0 32 ............................. TGGTCCGATTCTGCCGACCGTCGACACCAACA 143156 29 100.0 32 ............................. GCATGGCGACCTTGGTTCGAGGCGCGCCCGGA 143095 29 100.0 32 ............................. TGCTCATCGATATCCTCCAGCAACCCGGCATG 143034 28 96.6 32 .....-....................... TCATCGATGCTGATACGGAGCTGAAACGCAAT 142974 29 100.0 32 ............................. TCGCGCCTATAACCGTGCCGAGGATCATTGCG 142913 29 100.0 32 ............................. GCGGCCTATGAGGAGTTCTAGCCCCCCCGCCT 142852 29 100.0 32 ............................. CCGATTTTGTCCTGACTGGCCCGGATAACCTT 142791 29 100.0 32 ............................. TTCGGTGTAGGCAGCCTGCAGCTGCTCACGCA 142730 29 100.0 32 ............................. TTTTGTCCATGAGAATGCATGAATATCTCCGA 142669 29 100.0 32 ............................. TCGAGTACCATCACGCGGTCTGCGAATATGCT 142608 29 96.6 32 ..............A.............. CTGCAGTTGGATTTCGAGCAACAAACCTACGC 142547 29 100.0 32 ............................. TGCCGGCCGCCCTGCAGCCGTATTTGCCAAAA 142486 29 100.0 32 ............................. AGTTCGCGCGCTCGATTGCGAAATGGGGGTAT 142425 29 100.0 32 ............................. AGGGCGTGGCGCTGGGCCGTGCGAAGTACCGC 142364 29 100.0 32 ............................. CCAATACCGTTTTGCCGGCTCCCGTTGGCGCT 142303 29 100.0 32 ............................. ATTCGCGAACAACTGAATAGCAACGGCCCCGA 142242 29 79.3 0 ......T............T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGATAAGCCGGAGTCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGGCGGAAAGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTTGGAGGTGTTTTTGTTTTTAAAAATCAATTGCTTGCAATTGGT # Right flank : ACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156060-155116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQNP01000003.1 Chromobacterium sp. F49 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156059 29 100.0 32 ............................. TAGGAGGGCGGACATGACAGATCGCAGAATTG 155998 29 100.0 32 ............................. TTCTTGTACTGGATGTCGAACACCACCCCACG 155937 29 100.0 32 ............................. TCATCGATCAGTACCTCGAGGAACGATCGTTC 155876 29 100.0 32 ............................. GATGCGCATCCGCACCGATTCGATTTCACCTA 155815 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 155754 29 100.0 32 ............................. GAGGCCGTGCATTTCGGCAACGTGCTGGAGGG 155693 29 100.0 32 ............................. CTCATCGAGCGATTCGTTGGTACTGACGCAGC 155632 29 100.0 32 ............................. CGGGTGCCATTGAGCAGAAATTGCTGGGTCGG 155571 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 155510 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 155449 29 100.0 32 ............................. AAAAAGGATTAATCAAAGCCGGCCCAGCTGGA 155388 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 155327 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 155266 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 155205 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 155144 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 162043-160427 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQNP01000003.1 Chromobacterium sp. F49 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162042 29 100.0 32 ............................. AAGCTGAACCCCTTGTGCCTGCCCTCCTCCTT 161981 29 100.0 32 ............................. GGATTTAACCAGTTTCTTGGGGTCGGGGTCTG 161920 29 100.0 32 ............................. CGCGGCACGACGCTCGTTCAGCGTGCCGCAGA 161859 29 100.0 33 ............................. GACGTCTTAAACATGATGCTGGGATCTTTGGGC 161797 29 100.0 32 ............................. GTAGTGTCGTGGTTTGAGAGAAAGGCCTCCCA 161736 29 100.0 32 ............................. GTCCGCGACGACTAACTTTTTGCCGGGGGGGC 161675 29 100.0 32 ............................. GTCAGGGCGCACATCCAAGGGCAGTACTCGGC 161614 29 100.0 32 ............................. GCGTGATGATGAACGCCGACTCTCGCCAGAAT 161553 29 100.0 32 ............................. CGGATGCTGGGGCCGGTTACGCTGCTCTTGCC 161492 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 161431 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 161370 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 161309 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 161248 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 161187 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGGCGATGT 161126 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 161065 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 161004 29 100.0 32 ............................. GAGCAATCAGCCATGCGCCTCTACCTCTCCGC 160943 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 160882 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 160821 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 160760 29 96.6 32 ...................A......... CCGGCGATGTACTGGTTCTGCACGTCGAACCC 160699 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 160638 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 160577 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 160516 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 160455 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //