Array 1 204411-201703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPY010000003.1 Bifidobacterium dentium strain BSD2780061688_150302_D2 NODE_3_length_204503_cov_33.1945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 204410 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 204339 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 204269 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 204199 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 204125 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 204051 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 203980 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 203908 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 203837 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 203766 36 100.0 37 .................................... CGGAAGTATGGTACCATTCGCAGAACCGTCGCGACCA 203693 36 100.0 38 .................................... TAGACCACGGTACGTACCTGCTTGCTGAACACCGGCGT 203619 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 203547 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 203472 36 100.0 35 .................................... ATGCGCAAGACCAGCTCGACAAGCTTACCGGACAG 203401 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 203327 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 203256 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 203180 36 100.0 36 .................................... CATGGCGAGGATGCCGATTCTCGCGCCGAAGGGCCT 203108 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 203038 36 100.0 36 .................................... TTCTTCATATCGGTCCACGAGTGCGCCATGTTTTCC 202966 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 202894 36 100.0 36 .................................... CGGAAGAATACGACACCCTTTTCAGCGGCATGACCC 202822 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 202749 36 100.0 36 .................................... GAGTCCCCGTTATGACATCGGCACGGTTTTCGACGT 202677 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 202603 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 202531 36 100.0 38 .................................... TGCGTACAGCCGTCGCCAATGAGGGCGGCCTAAATCAG 202457 36 100.0 37 .................................... ACGGTCAGCGAGCTCGCCGAACGATTGAGATCCGGCA 202384 36 100.0 35 .................................... AACGCATTCAAAATCTATCCTAATGCGCGATATTG 202313 36 100.0 36 .................................... CTCCGCCCGCTCCCGACGAAACTCCTCCTCATCCTG 202241 36 100.0 36 .................................... GGTCTGTGAGTAGCCCATGTTCGCGGTCTGACACCA 202169 36 100.0 36 .................................... GATCTTCTCGAACACCTCATAGCGTCCACGACCCAT 202097 36 100.0 34 .................................... AGGTCGTGGACGATTATGGTACGACGGTGACGTT 202027 36 100.0 36 .................................... CTGGCTTGCATACTGTGTGCTCAATTGCGATTGCGC 201955 36 100.0 35 .................................... CTGCCATGCTTCACGGATGGTCAAATCCTTGGATG 201884 36 100.0 37 .................................... ACCATGTTTTTTCATCGACGTGGTTGGGGTCGAGCGT 201811 36 100.0 37 .................................... GAAGGACTGCCACACGTCCAATTGGATGTTCAACTGC 201738 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 38 36 100.0 36 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : GTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGC # Right flank : AGTCTTAGTGTAGAGCGTTGTGGTGACATGTATCTCAAGCAATTATGCGAGCGATGTACTTCATACCCTATGAAAAATGCGAATCTGGGAACGCTGAATCCCACAGAAACGCCATTTTCCGCATGCGAGCGCTTGCCGCGCGTCTCAGAAGTGATTCACCTCTCGTGCGCATGCAAGACGAAACACTCTTTAGTTATCAAACAGCCCAGCCGTTTTGACTGAAATCAAATAATTGTGGGAATTTCTAAGTCTGCATATCCTCGATGCCCCAGAAAATCCAATCCCTCTTCCGTCTGCGCAATTGTCCCCAATGAGCAGAACACAACAGAATCGGTTCCATAGTCAATCTCTTTCTCAATCTTCATACGTACGTTGAGCATCATTGAGGGGCGCACTTGCAACAGAAAAACACTGTATTGCAGCCGTTCTCCATAATGCTGAAGAATCTTCGCTACATGACTGCGACGGTAATCATCGCTCACATCATATGCAACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 874-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPY010000012.1 Bifidobacterium dentium strain BSD2780061688_150302_D2 NODE_12_length_102295_cov_34.1558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 873 36 100.0 37 .................................... GCAAATACGAGGACAGCAAGAACGCTCTGCGAGACAT 800 36 100.0 38 .................................... GTGATGCCGTACTCCTTGCCGCCGGTCACGTAGTGCAG 726 36 100.0 36 .................................... CTCAGGGACAATCTCGACCGGGCGGGCATGCCGTCC 654 36 100.0 38 .................................... TTTCCGGCATGGAATTGCACCACGTCATGGATGAGTAG 580 36 100.0 38 .................................... ATGAAACGCCCATGCATGCCAAAACGAAAAGGTTTATA 506 36 100.0 35 .................................... AAAAGCCTGAAATCGACCCTCTTTTCCACTGACAA 435 36 100.0 35 .................................... CCCATGTTCACATTCGGGTCGTTTGTCGTACCTAT 364 36 100.0 37 .................................... ATACCGAGTCTTCGAGCATGATTTGCCGCAGTTCGAC 291 36 100.0 38 .................................... AACACCGCAAGCTGGTTATTATAGGCTTGACCGCGCAC 217 36 100.0 38 .................................... TGCACCAGCTCGTGCACGAGGGTACAGCGCTTGCCCGT 143 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CAACCCGCCCTTTCGGTTTTTATTCTGTGTAAATAACTCCCTTCGCCTACAGTTCAATTTGGCGTCATTTTTCTCTGATCTTGTCTGAAAAGGATGTTTGCCGTTGTCTTTCAGGTTTTGCAAAAAGCTGGTTTTCTTCCAACGATTTACGATTGCCATGTTGGAGTGCGGATCAACTGTAGCCTTCGGAAGTTGACGCTCTTCTGCTTCGGATGCGTATAGTAATCCTACATTTCCATTCATTTAATTAAGTCATAGAAGCGACGATGGATTTGCCTTCTGGGACAAAAGGTATAGGATAAGGAAACGTAAAGGAAGAAGGGTCTCTGGCGGATTTGCAGATTCGCCAGAGACCTGCGAAACGGAAAGAAGGTGATAAGGCATCATGGCCGCCGCCCGCTTTCTGGCTCGTATTTCTAAGGCATAGAAACATGAGCCAGTATAGCAGGCGGAAAAGAGAAACGCGGTGTTCGTCTTTTCGCCGCAAAGCCGCTACCGCG # Right flank : TCCGGATTGATTTCGACGTGCTGGGCCATGATGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 128919-129659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPY010000009.1 Bifidobacterium dentium strain BSD2780061688_150302_D2 NODE_9_length_131164_cov_32.544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 128919 36 100.0 28 .................................... TTGCCTCGGCGGAGCCATTGGCTTATGA 128983 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 129047 36 100.0 28 .................................... GCATCGGAGGATCACCGGCTACACCGCC 129111 36 100.0 28 .................................... CCTGCCGTGAGTCGAAGTGATCCGGCAG 129175 36 100.0 28 .................................... ATCTAACCGCGTGGGCGCTACTATTCCC 129239 36 100.0 28 .................................... GTTGACAAGGCTCACGACACGTCGAATC 129303 36 100.0 28 .................................... TGCACGATCTGCGGCATACTGCGGCTTC 129367 36 100.0 28 .................................... CGTGGGATGGCGTCGTGGTTTTCAACCA 129431 36 100.0 28 .................................... TGATGCACGTCGTGCCGCTCTCGGCAGT 129495 36 100.0 29 .................................... ATGAATAGGTGCGACCGTCCTGCTCAAAA 129560 36 100.0 28 .................................... CGTCAAACATTTGACGAAAGGGGTATGT 129624 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : TATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //