Array 1 7203-3654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRS010000008.1 Thermus sp. SYSU G05001 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================================================================== ================== 7202 30 100.0 40 .............................. GTTGCCCTCCATCCCCTATGTAGGGGGGATACGGGAGGCG 7132 30 100.0 37 .............................. CTCTACAATGTTAGTCGTCCCAGTGCCGATTATTGTT 7065 30 100.0 37 .............................. AACGCGTCCGCCAATGCCCCCCAGGTAACTTCTACGG 6998 30 100.0 40 .............................. TCCAGCGGTGTGAACCAGGAGGGGTGCGCCATTACCACCG 6928 30 100.0 38 .............................. CGCCCCCTCCGATACCCGGCGAAAGCCGGGTTGCCCTT 6860 30 100.0 38 .............................. GCACACCGAGGCGTGGGCGCTGATCCGGGCAGCCCATA 6792 30 100.0 41 .............................. AGGACCGCGATGTCCTTAGACCCAGCCGATGAGGATATCAT 6721 30 100.0 36 .............................. ACTACGCCGTGAATAGCGGCCTGGGGGCGGCCAAGA 6655 30 100.0 37 .............................. CTCGACCCGCCAGGTGGTGCCCCGGGCACCGCTGGCC 6588 30 100.0 39 .............................. GTGGAATACTCCTCCGCAACCCGCACCGCCCCCGATGGA 6519 30 100.0 39 .............................. TCCCCCCGCTGGAGTACCACGATAACGGCCACGATTGCC 6450 30 100.0 40 .............................. GCTCCCCACATACGCCCTCTATTTGCTTCCCTTGCCATTG 6380 30 100.0 39 .............................. TCATTACCCATGTGTACCCGCCTAGCAAGTACCCTACGG 6311 30 100.0 36 .............................. GTCAGGTCCACGTTCACCTCCTCGCGCGCCCGGCTT 6245 30 100.0 38 .............................. GCGGGCCGCCTCAGCGTAGGGGTCGGCGTACATGGCGG 6177 30 100.0 39 .............................. CCGCCCTCCCAGCGCAGGACGAACCGGAGTGCGTCTGCG 6108 30 100.0 37 .............................. CGCTGTAGATGGGCTCCTCATCGTAGACGACTACGTG 6041 30 100.0 38 .............................. ACGTCTCTGTCCTTCTCCCAGCCGCACCGGCAACGAAG 5973 30 100.0 37 .............................. AACACACAAATCGCAGGCCCAGGACCAGGCTCTGTTT 5906 30 100.0 36 .............................. GCGTTCCAGTCCTTCAGGGCGTCAGCGGTTAAAGCC 5840 30 100.0 38 .............................. GCCATAAAACCCCCACGAGAACCAAAAACCCCACGCTC 5772 30 100.0 37 .............................. CAGCGCGCCCTCAAAGAGGGGCGGGAAGCGAAAGCGG 5705 30 100.0 39 .............................. CTGGCCTCAGCCGCCGCCCGGAAGGCCCTCTCTGCCTGG 5636 30 100.0 35 .............................. ACTATTCGGCCGGGTTGTGCTAGCATGGCTGACAA 5571 30 100.0 37 .............................. CTTCCCCCTCTCCCGTGGGATAAACCGCCTTCGCCGG 5504 30 100.0 36 .............................. TTCTGTAGCTAGAGTAGCCCAACATGACGCTATCCC 5438 30 100.0 39 .............................. TCGGAAAGTTCATGCCATTCCACCCGACCCCCGGCGGCC 5369 30 100.0 39 .............................. TCCTCCCCGGTGGCCCGAACGCGGGCAAGCGGGTATCCT 5300 30 100.0 38 .............................. CCCCCGGTAACGGTATGGCGCCTGGAAAGTGGGCACTA 5232 30 100.0 37 .............................. GCGATGTCGGAGAGGAGCTGAGGAAGGTCGGACTCGG 5165 30 100.0 38 .............................. TCGCGGTCTGGCCGCACCGCCATCACGGGGAGAGAGGT 5097 30 100.0 36 .............................. AGCCTCGTGCGAACGCCCCCATTGGGTGTTGCCACG 5031 30 100.0 36 .............................. CTGAGGTGCAGCTGGAAAGCGGCCAGGTGGTGATGG 4965 30 100.0 36 .............................. GTGAAACTGGACGCCATCCGCTACTGGGCCAGGGAC 4899 30 100.0 37 .............................. TTGGAAACGAAGATGGAGAACCCGGCCACCGCACCCA 4832 30 100.0 37 .............................. GAGGAGGCTCGCTCAAAGGGACGCTACGCGGCGGCGG 4765 30 100.0 38 .............................. TCCACCCGCCTCAGGTAGATGGGCTGGCCCCGTTTCGA 4697 30 100.0 37 .............................. TGGTCCCCGAGGGCACGGCCACCAGCTACTGCCCCAC 4630 30 100.0 37 .............................. CGCAAAAGCTCCATAGCCCTCGGGGCCCACTCCACGT 4563 30 100.0 163 .............................. TCCGAGCCTAAGCTCAGACTAGCAGACGTTGTATTCTACTGCAAGGGGCGGTAAAATGAGGTCAAACCCATCGGGCTGGGCCTGGGTTCCCAATAGCCCGATGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCTTTTTACGGCCAGCGGAGGAACCCCAC 4370 30 100.0 36 .............................. GCGGGCCGCTACGGGGTGATTCGGGATGTGGAGCGT 4304 30 100.0 36 .............................. AACGCCCTCTTCGCTCAAGCCCAGCTCCGTTACCAG 4238 30 100.0 45 .............................. CTCGGGTGGGAAAGACTCCTCGGTGGCCTGGCACCTGGCGCTCCG 4163 30 100.0 38 .............................. CAGATCATCTCCCCCTCCCGATCCCCGCCAGGACTGAG 4095 30 100.0 35 .............................. CTCGGGGAGGACGCCAAGGGGCTGGAGGACGCGCC 4030 30 100.0 37 .............................. TCGTCCAGGGCGTACACCCGCACTGCGGCAGGGTCTG 3963 30 100.0 49 .............................. AGAGTTCACTTCAGGTGGGGGAGCTCCTCGACACCCACCTTTGAACCGT 3884 30 83.3 35 ACC.AT........................ TCCCACGAGATGGAGGGCGCCGGGGGAGGGGCCGC 3819 30 100.0 39 .............................. GCTGGAACTCAACACGAACCACATCGCCGACCAGAGGGC 3750 30 100.0 37 .............................. CCATAATGGCGCGCTTTGTAGCCATAGAAGCTCCATC 3683 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== =================================================================================================================================================================== ================== 51 30 99.6 40 CTTTGAACCGTACCTATGAGGGTTTGAAAC # Left flank : CACCTGGGTCCAGAACTCTGTCTTGGAAGGAGAGCTCACCCCGGCGCAGTTTGCCCGGCTGAAGGCGGAGCTGAAAAAGGTGGCCGAAGCCTCCGATGCAATACGGTTCTATGTTCTTCCCAGCAAAAACTCCTTCCGGGTGGAGGTATTGGGTACTTCCAAAAGCGAGCCCAGCCAGATTATCTGAAGCCTAAAAGTCACCCGAGTGGCGTTACACGCAATAGGATTTGGCCCCAGGCCTAGCCTGGTTACGTGAAGCCCAAAACCCCTGCTTGCGAAAAGTTGCTTGCGTGGGCTTAACCTGTTAAGTCCATGGCTTTGACTCAGTCAAAAAATGCACCAACCCCTAATCGTGCAAAAACCCCGGGGGGTTGACGCAAGGGGTAGGGGTTGCTACTCTAAGCTCAGACAGCCGGTTTCTGCCCACCGTGCTGTAGGGGTTCTTGACAATAAATCTTAAGGTTTCGTGAGAGGCAAGCGTGCAGGAGGCATGTCTGACT # Right flank : CCCTCCGCCTCCAGCCCGAAGGGAAGTTAAGTCGCGACTTTTGTGGATTTCTCTTCCGCACCCGAGAGCGGGGCCATGTCCATGTAACGGCTGAACCCGTAGTCTTCTTGGGGGCTTCTACCCCAAAAGAACCGCTTCCAGCACCGCCTCCATAACCCCCCTCGCCCCTTTCCGTATACGCCGGCGGATCTCCTCCTTGGTCATCCTCTTCATCTGTGCCCGGTCCATCTGTTTCCCCGTGCTTAACCCACCAGATAAGCGACACTATCTAGGTCCTTCTTCTCCTGCTTCAGCAAGAATCTGCTCCAATCTCACCAAAAGCCTAGGAAGGTGTTCCGTCAGAACTTCCCAAAGAATGTCCTGGTCTAGGCCAAAATAGTCGTGGGCCAAAACATCCCTGAGGCCAGCTATTTCCCGCCAAGGAACCTCAGGATAACGTTCACGAAAGGCCGGGGGAATCCTCTTGGCTGCCTCCCCCAAGAGCTCCAGGTTACGTAAGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 16154-19680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRS010000008.1 Thermus sp. SYSU G05001 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 16154 30 100.0 37 .............................. ATAGCGCACCCTCCCCCAGTATATACTTCCTACGCGT 16221 30 100.0 36 .............................. GAGCTTCCACGCGTGGGCTTCCTAGCGGCGGTGGTG 16287 30 100.0 39 .............................. CCTCGTGCTCCACCGGGTGCTGGAAGACACTCAGCCCAT 16356 30 100.0 38 .............................. GTCCTGGGCGTGGGGGAGTATACCGCGACCCGGATCGT 16424 30 100.0 39 .............................. CCAGCGCTAGCAATAACGCTGGTGTCAATGGCCCGCCGG 16493 30 100.0 35 .............................. TTATCCCTGGTCAGGTTTATTATTTGTCCCGGTGG 16558 30 100.0 36 .............................. GTATACCGGGATGGGCGGGTGTACAAAACGCTCCCG 16624 30 100.0 38 .............................. ACTGGGGGGACAAAAAATGGTACCCTAAGTATGGAGGT 16692 30 100.0 37 .............................. ATCTCCTCCGGACTCATACTCGCCAGGTCATCCAGCC 16759 30 100.0 38 .............................. GCATGTACGACCTCCCATAGAGCTTCCTTAAGCTCGTC 16827 30 100.0 37 .............................. ACCGATGGCTCCCTTCACGATGGCTCCCTGAATGATG 16894 30 100.0 41 .............................. GTGGCGAAGGCGGTGGGGTTTGAGGCGGGTCCGGTCCACGA 16965 30 100.0 39 .............................. GCCGCCTCCTCGGAAGGCTCAGAAGGCACCCACTCGGGA 17034 30 100.0 37 .............................. CGGATGAGCCCGGTCAGCTGGCGGAAGCGGAGGTTCG 17101 30 100.0 37 .............................. GCCGAAGCGGAGGGAGCGCTCGGTCAGGAGCGCCAGG 17168 30 100.0 36 .............................. CCAGTAGAGGCGCAGGTAGCCGGGCCTCACTTCCTT 17234 30 100.0 37 .............................. ACGAGACCGGAGAGGCGCCCCTCGTCGTCCTCAAAGA 17301 30 100.0 36 .............................. CCCAGTTGGGTGGGGTGCGGGTGGGGCACACCTGGA 17367 30 100.0 35 .............................. AGGCCATAGAGAACGCCATCATAGAGGCCATCATT 17432 30 100.0 37 .............................. ACCGAACTCGTGGCCGACTACGCCGCCGCGGTGGGGG 17499 30 100.0 38 .............................. ATGTCGTACTTCAGCGTTCCCGAGGTGCCGGGGCTCAC 17567 30 100.0 39 .............................. TGGACATCCGCCCTGTTACCCAGGCGGCGTTGGCCGAAG 17636 30 100.0 39 .............................. GTGGGAGGCAGGTCGTGCGAGCCGCTTCCCCTCGTCCTT 17705 30 100.0 38 .............................. GTGTACATGACCGTGCAGAGCCCACCGCTCGCCGCCTC 17773 30 100.0 38 .............................. GCAAGAAGGTGAGGGCGTAGGAGGGGACATGGTCAGGT 17841 30 100.0 36 .............................. ATAGGGACCCGATACCGCATAGGACAGCCCAAACCC 17907 30 100.0 38 .............................. AGGGCATAGGCCGCAGGTTTTGAGCCCGCCCCCGCCTC 17975 30 100.0 36 .............................. AGGCTCTCCTGGCCCGGCTGGAGGAGCGGCTGGAGG 18041 30 100.0 37 .............................. CTCGGCACGGGGCGGAGGCCATCGCCAGGGGAGAAAT 18108 30 100.0 38 .............................. GGGACAACTCCCAGTAAACTACTGATAGAACTGTTGAC 18176 30 100.0 38 .............................. CCTCATCACGTATCCCGGCGAACTCCCTGGCCATCCGG 18244 30 100.0 40 .............................. CGGACTCCCGGGTGCCCGAGGAGGCGGTGAGCGCGTTTGA 18314 30 100.0 36 .............................. GCCACCTCCTCACGCTCCCGCTCCTCCGTGGCCCGC 18380 30 100.0 39 .............................. ATGCCCAGGAACGAACTGGACCCCCTCCTCTTCATCCCA 18449 30 100.0 38 .............................. CTATTGGCGGCCAGACCTACCAGGTGATCATCCGCCCC 18517 30 100.0 36 .............................. GCCCTTACCCAGGGACCGGTGGGGGCTGTGGTGTCG 18583 30 100.0 36 .............................. TGTCGCCCCCGCCGCTTACGTGGTAGCCGGGGGCCG 18649 30 100.0 37 .............................. CCGGGTCCGGCACGCGGTCCCAGTCGTGGGGGGCGGA 18716 30 100.0 39 .............................. TCCCTTTAGCGCCGTAGTAGAGCCCCTGGAGCGCCTGCA 18785 30 100.0 36 .............................. ACCGGCGACGACAAAGAGGGTATCGGGATGCAGTTT 18851 30 100.0 36 .............................. TATTGCTCCCGGCGTGGTGGAGGAGGTAGCCCACGA 18917 30 100.0 37 .............................. CGGCCACTTCCACGATGTATTCCCCGCACCAGGGGCA 18984 30 100.0 37 .............................. CTACCTTCCCCCTTGACAACCGCCCCGTGAGGTAGTA 19051 30 100.0 36 .............................. GGGCCACCGCGGTCCCGGGTGTAGACTCTTTCCCGA 19117 30 100.0 37 .............................. CATTGTCCTGCACCATACCGCCGGGCCGGAGAACCAA 19184 30 100.0 36 .............................. GGGCCGCCGGGCAAGACAAACTTTGCATCGGCGGGG 19250 30 100.0 38 .............................. GCAGCACGATGGCCCACGAGCTTGGGCACTGGCTGGAA 19318 30 100.0 36 .............................. CCCAGCTTGAACAGCACGAACGCACCGACGATAGCG 19384 30 100.0 36 .............................. CAGGTTTTAGGTGCGAGCCGTAGAGGCTGTTGTGGC 19450 30 100.0 38 .............................. GCCTCCAGGCCCGGTCTGTCGCCCTCCTTGTGTGGGGC 19518 30 96.7 37 ...T.......................... TCGGCCCCAACTCTTTCAAGAACTTTCCCGAACCTGC 19585 30 96.7 36 ...T.......................... AGCGGCAGCCGGTCCGCCATAGCCCGGGCCACCGGG 19651 30 96.7 0 ...T.......................... | ========== ====== ====== ====== ============================== ========================================= ================== 53 30 99.8 37 CTTCGAACCGTACCTATGAGGGTTTGAAAC # Left flank : AAGCCCGTTTTGGTGGACAGGCTCATTTTCCGCCTGATTCGCAGGCAGCAGATCAGCCCTCGCCACTTCCTTCGGGAAGGCGACGGAGTCTTCCTCTCCGAGCACGGGCGCAGACTGGTGGTGGAGGAGTGGGAGAGGACCTTACAGACCACTTACCGCCACGTTCGGCTTAAGCGGTCTGTTTCCTACAGGACCACCCTGCGCCTGGAGCTCTACAAGTTGGAAAAGCACCTGATAGGTGACGAGCCGTACGTTCCTTACCGCCTGAGGTAACTTCCTCTGTCCAGCCTGGATCCAGTTCGGACAGCGCTCTCTGGTTGACTCGGTCTAAGAATGCGCCAACCCCCAATCGTGCAAAAACCCCGGGGGGTTGACGCAAGGGGGTAGGGGTTGCTACCCTAAGCTCAGACAGCCGGTTTCTGCCCACCGTGCTGTAGGGGTTCTTGACAAGAAGTCTTAAGGTTTCATGAGAGGCAAGCGTGGAGGAGGCAGATGTGACT # Right flank : CTTTGAAACCTGGTATCACTGCCCAGAAAACCGTGTACGGGCCTGAGTCCCCCGGCTTTTGTCTCCTCACACACCAGGCCCACTTCCTCGGGGCACTTTTTCAGGAGAACGCTCCGGTTTCCCCTGCCGCCATCACGACCTCCAGAGGCGGGCCAACCACTCCCAGGGACCCGTACCCCTTTCCAAACCCAGCTTCCTCAGGCCCTTGCGGGACAGGATAAGAAGGTCCCCCCGTGCTTCTACCGCCAACCAGCCAGGAAGCTCCTTGGCATAGCGCTTGGCGTCTTTGCCCAGGGGAAGAATGAGAAGGTCTCCCTGCACCTGGCGGGCGTTCCCATGCTGACGAAGCATCTCCTCCACCTTGGACCGCACCCGTTCCAAGTACTCCCGAGAGAGGTCGCTATAGTCCAAGGGGGACGCCCAAGGGGGGACCTCTCCCAAGGCCTTCCCTAGTACCTCCACCAGGGCCTCCGAGGAAGCCTTAAGCCAGTCCACCTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGAACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 28947-29362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRS010000008.1 Thermus sp. SYSU G05001 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 28947 36 100.0 39 .................................... TTTTTCCCTTGATACTGAGAGCCCAGATGCCTGAGTCTC 29022 36 100.0 39 .................................... GCGTAGGCGTGTATGTTGAAGTCCATCCCGTTTAAGGCA 29097 36 100.0 41 .................................... TTCTGCATTACTCACCTCCCATACCTCTACCAGCACCTCAC 29174 36 100.0 41 .................................... ACCTGATCCCGTTTAGTCTCCTTCCGCCACTTCCGGAGGAG 29251 36 100.0 40 .................................... TGAAGATCAGCACCTTCCTTTCCATGGCACTCTCATACTA 29327 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : TCTCCCTTCCCAGGCGCACCATCCGTCCCTCGCAGGGCACGAAGGGAGAAGGCCGGTCCGATAGGCCCCGGCAAAGGGGCTCACCCAGAAAGGCAAGCCGCTTTCCGTGAATAAGGAGTGGGGATACCCGGCCGCCTCGGCGCCAGGCTATCCATGTTCGCAGTTTTGTGCCGCAAAGGAAACTGCTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGGAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGACTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACAGTGTTCTAAGGGGGGTACC # Right flank : CCCCACCTCGTTTACAGCGCCAGGAGCACTCCTTCTCGCCCTGGGAACCGTCATCCTCAGCGTGGTGCGCACCACCAGCCAGACGGCCACCACCATGGAGGACGGGGCGGCCCTCGAGGCGGAGCTTTCCACCTTGCGCCAGGCCTTGCAGACCGAGATCAACGCCAGGCCCTTCCTGATGATCCGCGAGGCCAGCGCCGACTACATCCAGATCATCCAGGGCATCAGCGCCGTGACGCCCTCGGGCGTTTCCCCCGCTTCCTTCCCCAGCGCCAACGCCTTCATCATCCCTTCCAGCACCCCCACCTCCCCGGTCAACCTGGCGGTGGTCAGCAACGGCCTGGGCCAGGGGAACCTGGTGCCCTATACCCGGCAGAGGCAGGGGAACATTGACCGGGCCTCCCTGGGCACCTGCGTGGCCGGGGTGGAGCACACCTCCAGCACGGCCTTCATCCCGGCGGAAACCCTTGAGATCGCCACGGGGCAGGCCATCAAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 71824-72162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRS010000008.1 Thermus sp. SYSU G05001 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 71824 36 100.0 41 .................................... CATCAACCCCGTTCTTTTGAGCCCAGGTCACCAGACGACCC 71901 36 100.0 40 .................................... AGGAGACCTCCAGGAAGTCTGGTCAGCCGATGCTCGTGGT 71977 36 100.0 41 .................................... TCGTCGTACTCGCCCAAAGAGCCACCCCAGCGGATGACGAT 72054 36 100.0 37 .................................... CCAACACCCACTGAGGCTCAAGCGCCTTTACAATCCT 72127 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CAGCGAAGGCCCTAAATACCCGGGATGTCTTGGAACCTGCGCACCGCCCTTCGGGGGGCAAGACCCCTCCCCAAAGTCCGAGGCCCAGCCCCCCCAAAGCCGGAGACCTCCCCCCGGACCCATACAACCGGCGGGCCGGGGGTCATACTATACATAGCTGCATTTTTGTGCCGCAAAGGAAACTGCGAAACCGGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCGGTCAAGCGTTACGTTCAAGTGCTATAATCAGGGTGTCCGGGAAGGCGGACGGGAATCTTGAAAGCCAGTTTTCCTCTTGCGTAAGGGCAATATGCGCTTTCACCTGCTTATCGACCGCTCCTACAGTGGCTTCGCAACGAGCTAAACCCCGTAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCGCTGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CACTTGGTTGGGCAATATGGGCGGGTCCCGGCCACCAACATGGAAAAATCTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGCGTGGTCATCCGGACGGCCCACGGGGGATCCGTGGATTACGTCCTGTTCCCCGCCCTGGGGGAGGCCAGGGGCTGGGCCAGGAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGAGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCACCTCCTTTTCAGCTATGCGGAGCATCTGAAGGAGCTCATGGGCCCGGATGCCTCCTCCGACGAACCCCGCGTGCGAACTGGGGAGGCTCCTCCCTAACCCTCGAGGCCAGTGCCCTTCTTAGCTACACATCGCGCTATTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 5 77411-78298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRS010000008.1 Thermus sp. SYSU G05001 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 77411 36 100.0 45 .................................... CCTGGAGCGGGGCCTGGAACGGCTACAGACCATCGTGGCCGAGTT 77492 36 100.0 42 .................................... TCCAGATGGAGTTTGCCGCCGTCCCAAAGCTTATGAACATCC 77570 36 100.0 40 .................................... TGGGCCACCTTAGCCTCCAGCGCGCCGTACACCTTACGCA 77646 36 100.0 41 .................................... CAATCCCGGTAAGATCGAACTCCAGCATCTCCTACTCCTTC 77723 36 100.0 41 .................................... ATAAATGGTCTTACCATCAGCGTTAATCGCGCCCCCATCGT 77800 36 100.0 40 .................................... TCACAACACTCCGCAACATATCCACCTCCTCACTGGCCTA 77876 36 100.0 43 .................................... ACGTCAGGCTACCGGCTATCCTCCCTCCGCGCCTGGGGGGTGG 77955 36 100.0 43 .................................... AGATTTTTACAGCACCAACGGGGGCCCCAACAGTCTGGATGAT 78034 36 100.0 39 .................................... TGGGTGCAATGGCCGAACCCGTCGTTAAAGCACCTTTCG 78109 36 100.0 41 .................................... TTTCCGTGGTAAGCCAGTTCCACCTTGCCGCGCTTGATTAG 78186 36 100.0 41 .................................... GCCAATCTCCGCCTGGGGGTCCTTTTCCAGCATGTAGGCCA 78263 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================================= ================== 12 36 99.8 42 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATACTCAAGATGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGGAAGCCGGACGAGGATCTTGAAAGCCAGTTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCCCAAGCCTGGGTATTTTGTTTTTATGAAGCGTCTCTACGCCATTGCCTACGACATCCCCGACGACAACCGTAGGGTCAAGTTGGCCAACTTGTTGAAAAGCTATGGCGAGCGTGTACAGCTCTCTGTTTTTGAGTGCTACCTGGATGAAAAGCTTCTGGATGACCTGCGTACCCGGGCGAGAAGAGTGCTGGACTTGAGCCAGGACGCTCTACGCATTTACCCGGTCGGGGGAGAGGTGCAAATCCTGGGCCTAGGGCGAATCCTCTTGGACGCGACCTACAGCGTTGCCTAGCATCCCCCTTGGCAGCGCTCACATTCATTGGGGAGAGGAGGTTTTTCTGACATCCCATTCCCTAAGCGGCACCTAAGGGCCAGGCGGGACCAACGGGGTTCTGGCTAAGCAACGGGAACCAACCTGCCAACAGTCCAGCCAAGGGGGTAGCCGTCCTTGGGCCGCAAGGCTCCTACCGTCTTACGGGTCTTGGGCTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //