Array 1 119752-120190 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGT01000019.1 Clostridium sp. AF18-27 AF18-27.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 119752 33 100.0 35 ................................. AATCCCCTGCTATATTTCACGCACGCCATCAGAAA 119820 33 100.0 34 ................................. ATGCCATCGTGCGGGTGGATGCTGCGGATTACAC 119887 33 100.0 35 ................................. CTTGCCATAGATGCCTCCTTATACTCTGATAACTC 119955 33 100.0 35 ................................. TCCCCTTCCTTAATATCATTAATACCCGAACAACC 120023 33 100.0 35 ................................. GCTGTCGATGATTTTGTAGGCTGGCGCGCCCTTGT 120091 33 100.0 34 ................................. GATCCGGTGTTTACGGAGACAGCCGGAAGCGCCG 120158 33 90.9 0 ..............A.......CA......... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 98.7 35 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : TCCGGGAGCTTGACGCGAATACAGGGCGTGTGGAACTGACGGAATTGTGTTATGAGAATTTGGGCCATAATATAGCGGAGGACAGTGAGGCGGTAAAAACGCTGAAGATAATGGCGGCAGCCGAGCCTCTCCGCCACGACGTCAGTTATCCGCGAATAGATGGAAACAAGACCGAGTCGTTTCGTTGGTTTGTCAATAACCGTACAAGGAAAGAGACAACAACGCTGCAGCCAACATTTTCCAAGATTCTTCCCAAAGCCGAGGAGGAACTGGATACGCAAAACATATGTGGGAAACGCCTGCACACGTAAGCGTAATTTAAAAATCATAAGTCACAAAGTGCGAACCACAAGCCCACATAAAATCCCAGGAACATTCGCACCGGAAATGGGAGGGAAAAAGGAAGAAGTTGTAAGAAGAGGGTTGATTTGTGGGGGGAAACGTGTAGAATATGAAATAAGAGAGTGTAGATTTAAGGAGAAAAATTGGTGAGATTTGCC # Right flank : TCCACAGGCGGTCGGCTAATTTATTAGCCGATGACTCACAGCCTCCGCCTTTATTCCCCCTCCATCCACCTTCTACCCAAAACCCTCCCTTCACCCCCAAACACCCCCAACATTTCCTCAAAAATTCCTCTCCATCAGGATACTTTCTCCCAAAATCCGGTACAATAAACACTAGACCGGAAAAGGAGGAACAGAAAATGAAAGACTTAAACAACCATTGCACAATCGATCTCCAAACCCTATCCCAATACCAACAACACCTCTACGAACAGGAAAAATCCTACCCCACAATCCAATCCTACCTGCGCAGCCTCAAGGCATTTGCAGTCTTTTTAGACGGCCGTCCATACACCAAAGAAACTGCGATCCGCTGGAAGGAAACCTTAACTTGCCGCTACGCCCCCAACACCGTCAACGCCATGCTGGCCGCGGTCAACGGCTTTGCTGAATTTTCGGGTTGTCCGCAATTCAAAGTAAAGCCCCTGAAAATACAGCGCGAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 92562-92931 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGT01000024.1 Clostridium sp. AF18-27 AF18-27.Scaf24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 92562 33 100.0 36 ................................. TTATGAGAATCATACCATGATTGCAGATGAACTCGG 92631 33 100.0 33 ................................. AACACCATATGCCAGGCAGATATACAATTCTGC 92697 33 100.0 34 ................................. CAATCATCATAATGTATTGATCTATGCCGATCCG 92764 33 100.0 35 ................................. GTCTGACAGGCGGTTAATCAGTCCCTGGGGGATAT 92832 33 100.0 34 ................................. AGGCAATCTACTGGGGGCTCGGCACAGTGGAAGC 92899 33 90.9 0 .........T.......A........C...... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 98.5 35 GTGTTCAGCCGCGTAGCGGTTGTGAATTAAAAT # Left flank : GCAACGATTTTTTCTGGAAAAAGAAGGTGCGTTTGAGTTCAGTACCATGGCACAGGATTTCAAGATAATTTCAAATGAACCGCAGGCGCTGGCTGTCGTTGACCCAAAGCTGGTAGGGGCAATACGGGCTGGAGTGTACTGTGACAGAGCGGAGCTTCAGAGAAAGAGCGTATCACTTTATAAGAGTCAGGTTACGCGTCTGGAATTGTCACCGATTGTAAATGGTGAAGACCTGTATGCACTCCCGCCAGGACAGTATGATGCGGAACTTTTGGGATGTTTTAAAAATATTGTTGGAACGAATTAGGATGATACGGGTAAAATGCTGGTGCGAATACCGAGTGAACAGGAATTTGCTGGGGGATTCGCACTGGGATAGTGAACAAAATGGGGAGATGGTGTTGATTTGTTGAAGGGGGGTGAAGGGAAGAATTGAGAATAGGTGGGGTGAATTTGGTGAAAATGTATAAAATATGGTGAAAAAATTGTGAAGTATTGCT # Right flank : CATCAGACCGGCCATCGAATATCGGAGATGGTGGCGAGGTCCGATCGCATAGCGGTATGTTTTTATAATGCAACTAATCATGACCACCCGTCAAACGGGTGGTTTGCTCGCCCCTATCAGGGGCAGTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCAGCCGCGTAGCGGTTGTGAATTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2381-2613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGT01000021.1 Clostridium sp. AF18-27 AF18-27.Scaf21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2381 32 100.0 34 ................................ AACCCCGATGGGAAGGTCCTGCCGCTCTGGCTGC 2447 32 100.0 36 ................................ TTCCTGCGGTTCTGGCGGAGACCAGATCAAGTTCGT 2515 32 100.0 35 ................................ GTAAGCTGTCAGGAGATATGGTGCGAGTGTTTCGG 2582 32 81.2 0 .....................CA....T.CCC | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 95.3 35 GTCACGCCTTATGGAGGCGTGTGGATTGAAAT # Left flank : CGGTTATGGGGCGATGCTGAGCTTTCGGGTGGAGGATGATCTGGAGAAGGTGGATGAAATGATCCACCGGCTGAAGGTGATCCGGTACCTGGGAACCCTGGGCGGCATCCGCACCAGCCTGGCCCACCCCGCCACCGCCTTCCGCCATGAGTTCAGCCGCGAGGAGCTGGAGGCGGTGGGGATTTACGACGGATTGGTTCGGATTTCGGCGGGGATCGAGGATGCGGGGGATTTGATTGAGGATTTGAGAGAGGCGTTGGGGGTGTTTGGGGAGTGAGGCGACGGAAAAAATGGAGATAGGGAGGTATTATGATGAGATGGCTGAAAGGTGCGAATGTGAAGTGAACATGAAAATGCAGGGGGATTCGCACTGGGGAATTGGATAAATATGGGTCTATAGCTTGATGGGAGAAGGAAAAGATTGCGTTTTGGTGGGGGAGGGTGTAGAATATAGATGAAATTGTTGGGGAGTTATGGGGAGATTTTTGGTTAGTTTTGAT # Right flank : CACCCCAACAAACCCCAAAGCCCGCTAGACTCCAAATTACCTCCGGAGCCCAGCGGGCTTTCTTCCTATTATATATATTCTTTTAATTCCAATTATTCCTAATTTGTCCCCTTCTTCAAATTCTTCTGCGCAGTTGCCAGCATGAGCTTGATGCGGTTTAGCTGGTTGACTTCGCTGGCACCGGGGTCGTAGTCTACGGCGATGATGTTGGACTGCGGGTAGTGGCGGCGCAGTTCCTTGATTACGCCCTTGCCTACGATGTGGTTGGGCAGGCAGCCGAAGGGCTGGGTGCAGATGATGTTCTCCACGCCGCTGTGAATCAGCTCCAGCATCTCGCCGGTGAGGAACCAGCCCTCGCCGGTCTGGTTGCCCAGGGAGACGAACCCCTGGGCCATGCGGGCCAGCTCGTCGATGGCGGCAGGGGGCGTGAAGTGCTTGCTGGCCTCCAGCTCCTTGCGGGCGGTCCGGCGGAAGTATTCCAGCAGGGCGATTCCCGCGTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTATGGAGGCGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 141451-141900 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGT01000016.1 Clostridium sp. AF18-27 AF18-27.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 141451 35 100.0 35 ................................... ATGCAGAGATAGAAGAACACAGCAAAAAACCGGCA 141521 35 100.0 35 ................................... CAGTTCTACTTTCAAACTGGATTGTATCCATATTT 141591 35 100.0 34 ................................... ATCTGTCCATAGTTTGGTTCCGGCGCGGGAGCTG 141660 35 100.0 33 ................................... ACAGAGGGATATGGGCAGCATGAGTATTACCTG 141728 35 94.3 33 ............C......A............... ATCTGAGCCTTTTCCTCCGCAGCTTTTTCCTCC 141796 35 91.4 35 ............C......A..A............ AGAATTAATAAAGTATCTGTTGTCAATGAAGGCAT 141866 35 88.6 0 ............C......A...........C..G | ========== ====== ====== ====== =================================== =================================== ================== 7 35 96.3 34 GTCGCATTCTTGTGAGGGAGTGCGTGGATTGAAAT # Left flank : GGCGAACAGGAAGCAGCGGGCGAGTTGGCCGACGCAAACGGGGCTGGTTCTGCGGTATTGCGGTTGTATTTGGAAAAGGATCCGGCGATCCGGGAGGTGGATTGTGGGTTTGAAGGAGTTGGTATGAAGATACCGGTGGAAGTTTGTTCTGAAGGCGAAGTCATGAAAATCACTGTAAAAGAGCGGGAGACTATGTTGCGGATGGTGAAGGAACTGATATTAAACGGAAACCTTGATTTGAGGCGATATGTAGCGGGGGAGTGTGAGATTTAAAAACGGGGCTACAGGAGATAGAATGTAGTGGGCGGATCAAATGTAGAGGATACATAGTGCGAATCCTAAGTGAACATGAAAATGTAGGAGGATTCGCACTGGGAAATTGGGGATTTATGGGAGAATATGGCGCGGTGGAAATATAAAGGTTGAGTTTTTGAGAGAGGAGGGGTACAATAGGGATAAGAAATTGACGGGATTAGAAGGGATTTTTGGTAATGGTTGCT # Right flank : GTTTTTGGCGATACTCAAAATGGGTGACAGAATAGCTTATTGTGAGTATGTGAAAGTTTTTCTGTAAATAAGGTTTTATAAGGTCTTCTATGGTAA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTTGTGAGGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //