Array 1 1737-2829 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXAI01000016.1 Neisseria meningitidis strain INS-Nm984 NODE_15_length_46121_cov_73.9537, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      1737	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA 	
      1803	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT 	
      1869	    36	 100.0	    30	....................................	GCCCCTGCTCGCGCACCGCCGCAACCTGCC 	
      1935	    36	 100.0	    30	....................................	GGTCAGATTACAACAACGTTGAGCGTGTGT 	
      2001	    36	 100.0	    30	....................................	TCTTTTGACAACAATTTCACTGGCGAAATG 	
      2067	    36	 100.0	    30	....................................	TCATTAAATGATGTATCACAAGCACTTTTT 	
      2133	    36	 100.0	    30	....................................	TACATCGGCGGGATGTTTCAGTTCGTTTAT 	
      2199	    36	 100.0	    30	....................................	ATAAATCAATACCGTGAAAACCTCATGTGT 	
      2265	    36	 100.0	    30	....................................	GAGCATCTATTAGGGGTGAAGGTAGATCTT 	
      2331	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGT 	
      2397	    36	 100.0	    30	....................................	AGACTTAGCACGTTTAACTTGCTTAACAAG 	
      2463	    36	 100.0	    30	....................................	CAAAAACTTTTTAGGGGGGTCGAAAAATAC 	
      2529	    36	 100.0	    30	....................................	CAAAGCTATAAACACGTTTATCTGTTGTTA 	
      2595	    36	 100.0	    30	....................................	AATATTTTTTTATAAATTGCCGTCATGACG 	
      2661	    36	 100.0	    31	....................................	AGTAAGATGAGAAAATTATTGGGGGGGTGGC	
      2728	    36	 100.0	    30	....................................	TGTACGACTCGGCTCAGGCACGCAACAAGT 	
      2794	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                               	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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