Array 1 80703-82581 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000019.1 Streptomyces sp. SAJ15 Seq19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================== ================== 80703 27 85.7 34 ..G..........A...G.....-.... CTAGCCGGTACGGCAACGTGTACGTGATCGACCG 80764 28 64.3 38 ..G........A.AG..G...T.C.AGT GGCGGGGACCATCCCTCGCGGCCGGGACCGCACTGCCG 80830 27 75.0 56 ...........-AC.TG......C..G. CGATGTAACCGAACGAAAACGGCTGCACTCCTCGGTAAGGTTCCAGCTTAAGAAGT A [80849] 80914 28 82.1 33 ............CC...G......A.C. TGCCATCCGTCGCGAATGACACAACGTCCGCAC 80975 28 82.1 33 ............CC...G......A.C. CTCCTCCTCGGTGGCTCCGGCGCGGTAGGCGGC 81036 28 82.1 34 ............CC...G......A.C. CGTGGGTTGTATCGCTCCGGAATTTCCTTCGTCC 81098 28 82.1 33 ............CC...G......A.C. CTCTCCGAGACGCCCGAGGAGACCCGCTACACC 81159 28 82.1 33 ............CC...G......A.C. TTCGATTTGGGTCCTGAGTGCCACAGATGAGCT 81220 28 82.1 33 ............CT...G......A.C. CAGTGCTGAACCGCACGCGGCCCGGTGCCGGAG 81281 28 82.1 33 ............CC...G......A.C. CCCGCATGAAACGGGCGCAGCTGGGCTGGCGCA 81342 28 82.1 33 ............CC...G......A.C. CTTCGAGATGCCGACGATCGGTCGCTCGTCCGG 81403 28 82.1 33 ............CC...G......A.C. CAAGTACGTGACGATGCTCGGGAAGCGGCTCGT 81464 28 71.4 86 ............CCT..G...G..TGC. CCGCCGATGGTCCGAGGGAGCCTGTGCTGCTTGAGTGACCGAAGGAGAACGGCTGCACTTCTCGGTAGAGTTCCAGGTCAAGAAGT 81578 28 100.0 33 ............................ GAGGTATACATTCCGATACTCTTCGGCTTCCCA 81639 28 100.0 33 ............................ TAGACTTTGCGCGCGGCATGGCTTCTACGTTAG 81700 28 100.0 33 ............................ TGTCACATTAGGCACTAACTCGCTCCGGGTCCC 81761 28 100.0 33 ............................ CTGCATATCGCTGGATCGGCGTCTGATCAGGCG 81822 28 100.0 33 ............................ CTCCCGATTCTGGATTCGGTCCACGATTTGCCA 81883 28 100.0 33 ............................ CGCGGCCGGGGACATCGGCGGCGGCCACCAGGC 81944 28 100.0 33 ............................ GAAGGCTTGGGACGCAAAGAAGGTTCTTGCGTT 82005 28 100.0 33 ............................ GCGGAGGAGGTGGGCCCTGCGGACGCGGGGATG 82066 28 100.0 33 ............................ TCTGACCCACGCGACCGTCGCCCTGGACGACGA 82127 28 100.0 33 ............................ CGGCCTCGCCTCACTCGCCGGACTGATCTCCAG 82188 28 96.4 33 .................G.......... CGTCATCGGCCGTATGACCGGCGCGGCGATGGC 82249 28 96.4 33 .................G.......... CTCGCGAACACGGCCAGTCGCCGCTCCGGGCCC 82310 28 96.4 33 .................G.......... CACACCAAAGGCGGCACCCCCCACGGCTACTAC 82371 28 96.4 33 .................G.......... CAGCTGGGCCCTGCTCTGGATGACGATGACCAG 82432 28 92.9 33 ...........A.....G.......... TCCTGGGGCTCACGCCACCCGGACCGGGACATG 82493 28 96.4 33 .................G.......... TCATCCGGGACCTTGCCGCGGCGCTGCCGTCCG 82554 28 85.7 0 ........T........GT.......C. | ========== ====== ====== ====== ============================ ====================================================================================== ================== 30 28 89.9 36 GTCGGCCCCGCGGGCGCAGGGATGGTTC # Left flank : GCTGTACGAAGGCACCCTGCAACGGCTCCTGCGCTACGCCGACCAGCTCCCCAACGAGATCAGCTGGTACTTGAAGCAGTCCCGGGCGGGCGCACTGCCACACCAGATCCGCACCTGAACAGCACGAGGTCGGGCTGTCGACGCCCAGACGCGCAGGTTCGCCCGGCGCCGCTATCCCGCCATTGGGCTCGAGGCACATCCACGGCCGCCTCCGGAGAGGAAGGGACTCATGGGAACAGCAGGCAAGAGGTCACTTATCTCGAACTGGACGAGCTCGACGCGGTCGTCGGCCCGCCCGCCCAGGCGTACGACGACCTCCAAGAGCTCTGGCACACCCTGCCCTTTGTGGAGGGCGACCCGGCCATGGAGCGGGCCGCGCTCATCCTCAACGCCATGGAGGCGCTGATCATCTTCATGGTGATCCCGGACTCCAAGAAGGCGACCAAGGACGCTACGACTGGACTGAACGAACTGCTGGCCCATGACGGAGACCTGGGCGA # Right flank : CCGGCGTGCCGGTCGGCTACCCGCACAGCCTCAAGTCGGCCCTGCGCAGCAGGCGGGGCCGACTGGGTCGAGACCCGCGTCGTGACCGAGCACGAGGGACCATCCCCACGGGCGCGGGGCCGACGCGCGGTCGCATGTATCGCGGACTTTCGGCGTTTTCCCTGGTGAGAGGGATTGTCAGTGGTGCTCACTACGCTGCGCGGGAGACTGCGTGGCTTGGGAGATGCGATGGATGTCGAACGGCTCAGTGAGCGGTATGGGCGGGGGGTTGTGGCCGTTCTCGGTGCGCTGTGGGGGAAGTCGAAGGAGCGGGCTGGCGGGCGGACGAACCTGCTGGTGTCGCATCTGCTGGATACGGCTGCCGTCGCGGAGTTGATATGGGATGACTATCTCGGGGCTGTGACACGCGATGCGCTGGACGAGGTTGCCGGGGGGCGCGGGCGTGGTCGTGAGTTGTTTGTTTGGCTGTGTGGTGTGCATGACTGGGGGAAGGCGACGCC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGGGCGCAGGGATGGTTC # Alternate repeat : GTCGGCCCCGCGCCCGCGGGGATGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 92418-93974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000019.1 Streptomyces sp. SAJ15 Seq19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92418 29 96.6 32 ............................T CACCGGAAGTTCGTTGACGGCAACTGGACGGA 92479 29 100.0 32 ............................. TGCTTCTTCGCTGCCTGATACAGCCATTCCGC 92540 29 96.6 33 ............................T TCAGTTTCCCAACACGAATCTTCGTGAGTATTG 92602 29 96.6 32 ............................A GCTTCCTTTTCTTCGTGGAAGAAGTGGAATTC 92663 29 100.0 32 ............................. CCCGCCCCGATCGTGCCCCGGTGGGTCTGGAA 92724 29 96.6 32 ............................T CGGATTGGAACTTGGAGCGGACGGAAAAGCGG 92785 29 100.0 32 ............................. ACCATGGCGTCAGTGCAGCGGGCGAACTGGGC 92846 29 100.0 32 ............................. ACGGTGCCGTCCAACTCACCGCACGGCGCACA 92907 29 100.0 32 ............................. TGTCCGGCCTTCATCTTGTCGCGGCACTTGAT 92968 29 100.0 32 ............................. GGCAACACGTCTGTGTCGGGCGCCGCTAGCTC 93029 29 100.0 32 ............................. GCCAGCACACGGCCGATGTACGTCTCCCAGGC 93090 29 100.0 32 ............................. TGAACGCGGCGGTCCTGGCAGCGCTCGCGTCT 93151 29 100.0 32 ............................. AGGATGCCCAGGCTGATCCAGTGGCTGGTCAC 93212 29 100.0 32 ............................. CTGCACCGACGCCCGACCGCCGGGCAACTGCT 93273 29 100.0 32 ............................. TGAGGAGTGGGTCAAGTCCAACGGCGGCCTGG 93334 29 100.0 33 ............................. AGGTGATTTGAGGGGGCCGCATGTTCATACGTG 93396 29 100.0 32 ............................. GGGTTCGGTCACGCACCAGCGATTTCCAGCCT 93457 29 100.0 32 ............................. ACCGAGAAAGGGCCGTCCACATGGATTGGGCC 93518 29 96.6 32 ............................T GGCAAGACTCTTACCAAGATTCGGCAGCAGTT 93579 29 96.6 32 .......T..................... CAGGTGAGGGTGGTCAGTGTGAAGGGCTGCCG 93640 29 100.0 32 ............................. CGCACATACGGAGAGTCACCCATGAGGTGGTA 93701 29 100.0 33 ............................. GGAAGCGGAGCCGGTGGCGGGGGCACGGTCCTG 93763 29 100.0 32 ............................. GCCGACGGCGGCCCGGAGGTCCGGGTCGGCTC 93824 29 96.6 32 .................A........... GCGGTATCCGCGGCGTCATACGCATGGACCTG 93885 29 100.0 32 ............................. ACCTACGGAAACACCTCACTCCCCTTCAACGC 93946 29 93.1 0 ........T...................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.8 32 GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Left flank : CCCAAAGACAAAGACTTCGAGGAAACCGAAACCAATCAGCTCTGGGACGAACACCTCGGCGTCGTACCCGGCGGCACCAACTGGTCACGCGACGGCGACCTCTCCACACACCGGATGACCGACAACCACATCGCCGTCATCGGGCCCCAGACCGAAGCAACCGAGACCGAACGATGACCGTCATCATCCTCATCGCCGCACCCGAAGGGCTGCGAGGACACCTCACCCGCTGGATGGTCGAAGTACACGCCGGCGTCTTCGTCGGCAACCCCAACCGCCGCATCCGCGACCGACTCTGGGGCCTCCTCGCCACTCGTATCGGCGACGGCCAAGCGGTCCTCGTAGAACCCGCAGCCAACGAACAAGGCTGGGCCGTACGCACCGCCGGCCGCGACCGCTGGCACCCCGTCGACTTCGACGGCCTCATCCTCTCAGCGCGCCCACGAACCCAACCGAAGCAAAACAGCCGTATCGCCAGATGAAACCGCAGGTCAATAAGT # Right flank : AGCGTGAGGGCCTGTCCGCGTCGTCGAGCGGCGGCGGCCAGCAGGCGAAGCAGAAACCGCGGCCGGTCCCACGGTCCGACGGGACGGGCGCGAGCCGGATCGGGGCGCTGCCGGGCCTCCGGGTCGCGCCGCGGGAGCAGTGGCCGGCCCTCGCATCCGAGATGTCTGGGCTTGTCGCCGCGCGCTGGGAACGACAGAGCGGACGACCTTCCCCGAGGTTCTACCGGCGGTAGAATCGGTGGTATGAGTAAGCCGACGAGCATCAAGACCAGCGAGGAAGTGCGCGACCGGCTGCGTGTCCTCGCCGAGGAGCGCGGCACCACCATCACCGAGCTGCTGGAGGAGCTCGCTTCCCGTGAGCTCACGGAAGCCGAGCGGGAGCAGCGTGCCCTCGAGGCGGCCCGTGAGCTCGGTATCGAGTACACCGCGCAGGTGCAGCAGGTTGGTCAGGATGCCTGGGCGAAGATCCGCGCCCATCAGGGCGGCGCCGCCGCGTGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154377-154705 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000002.1 Streptomyces sp. SAJ15 Seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 154377 37 97.3 37 .............................G....... ATCGTCTGGACCTCGGACCCGGACGCCTGAAGCAGGG 154451 37 97.3 35 .................................G... ACCTCCCGCTCCAGAGCGGCGACCTTGCGGGCGAG 154523 37 100.0 36 ..................................... CCTCCCTCGACGACTACGACCTCTCCGGCATCCGCC 154596 37 94.6 36 ..........T........A................. ACCAACGCCTTCGGGCCGAGCGGCCAGACGTGCACC 154669 37 91.9 0 ..............T........T............T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TCACAGCCCCGAGTCAGCCTGTCTGCTGTCCAGGCGCGGTCTTGGGCGACGTCAGCCGCCAGCGCCACCAGCCAAGTAAGCAGTTGTCCGGGTGATGCGACCGGCCATGGGCCGCCCGGGGGAGCGGGCTCGGCCGGCCCGGCCGACGGGGCCTCCAGTGCGCCCTGCTCCGCTCGGCCAGGCCCGGCCAGCCCGGCTCCGGACCCCTGACCGGGAGGGCGCCGGCCCAGCGGAGCAGGACGTTGCCGCCTCCCCTGGGGCGCCAGAGCGCAGGCCCTCCACCAGCCTCCCTATGGCGATCGCGTACTTTGACGACCACGATGTCCGCTACACGGCCGACAGTTGGATGAGTGTTCCTTCCTCACGACTGCTTCGGAACCAGAAGCACACACGCGACACGCGAATTGCACCTAAGTCGTATGTCCGTATTCAGCAACTCTGTTACTCGATGCTCACCCACAGAGGAGTGAGCGGTAGGCTGTTTACACTGCTCAAGCAGC # Right flank : TGCACAACCACGTCGGTGGCCAGGGTGTGGCGGCCTCTTGGCGGTTGTCTTGGGAGGCTGTTGATCGGTGAGTTGCACGTGCTGTGCCATCGGGTCTTAGGCGCTCCTGCTGGCTTTGACCCGGATGCTGGAGAGGTGGTGCTGTCAGGTCAACAGGAATGGGACGGCTTCGCGGCTCGGTGTTCGCAGTGTGGGTTAGGCATTTTTTTGGGGGGGCTGATTCGGGTCTGTGGCCGGTTGGTGGCCGAAGGTGCGGATACGGTCTTGGTCTCGTCGCGGAGGGCGCCGTGCGCCTGGTGGGGGAGGAGACGGGGTAGTGGCGGGTGTGTTGTATGCGCACAGCCTGAGTGGTGTCTCGGGGGTGCGGCACACGCTGAAGGACCACTTGCGTGGCTCGGCTGCGTTGGCGCGGCGTTTCGGGGAGGTGTTCGGGGCCGGGGAGTTGGCGGAGTATCTGGCCTTGGTGCACGACGTGGGCAAGGGGGCGTGTGCGTGGCAGG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 164379-165805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000002.1 Streptomyces sp. SAJ15 Seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 164379 37 91.9 35 .........A............A.....A........ GGTGAGGACGCTCTCATGTTCCGTGGCGGCGTCAA 164451 36 83.8 36 C.........T...T.......A...-..G....... CGGATCATCGAGCGGGTCGACGGCCGGCCGTGGCTC 164523 37 89.2 37 C.............T..A....A.............. TACAAGGTCGGCCCCGGCCCGGCCTGGTCGGACGCCG 164597 37 91.9 37 C.......T.....T...................... GCTCTATTCTGGGAGTGGTGACCTCGGGCCTGGCAGG 164671 37 94.6 34 ........T.....T...................... CTCTTCGTCCGGACGATGGTTCCGGACCCGACAA 164742 37 100.0 34 ..................................... ACCGGCCGTCGGCTGATCGAGGAGCTGCGGGATC 164813 37 97.3 37 ..............T...................... GTGTTCCCGGACACGGCTAGCGTCCGGACCCCGACCG 164887 37 97.3 36 ..........T.......................... GGCGCCTGGGACGGCGTGCCGACGGCCGGCTTCACC 164960 36 86.5 35 C.............T.-..AT................ TCGCCCCACTTGCCGAGGTTGCGACCGGTGCGACC 165031 37 86.5 37 ...A..........TT..A....T............. TCGGTATGCTCCACCCCGTGACCGACACCCCAGACAC 165105 37 91.9 38 ..............T........T.....G....... GTCCAGCGCCAGCTGCCGATGGACATCGACGTAGCGAG 165180 37 91.9 37 ..............T...A....T............. TTGCCCGCGACGATCCGCAGGTTGATGCGGGGGTCGA 165254 37 94.6 38 ..............T........T............. GGCCTGGAGTGGCACCGCACCTACCTGCCTGCCGACGG 165329 37 97.3 37 ...........T......................... GACTTCCCCGGCTGTATCAGCAGCTACACCTACGCCG 165403 37 89.2 36 ...........TTA.........T............. TGCGACACGCCCCGGGCGAGCTGCTGCTCGATCCAC 165476 37 97.3 37 ...........T......................... CGATATACGGTCCGCGAACTCCAAGGCGAGTACGACT 165550 37 94.6 37 ...........T.C....................... GCCGCCACGTCGAACTGCTCGCGGATCTCGCTGACGG 165624 37 100.0 37 ..................................... GGTCCGCTGAACCAGTCTGGCCGGGCCCTGCGCAACG 165698 37 86.5 34 C........A....TT..A.................. ACGTACTGCCCCGATGACCGCGCAAACGCCAGGG 165769 37 89.2 0 ..............T.C...T...............T | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 92.6 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AAGCGCTGCGCGCAAAACTGCACTACCCGGAGGTCGCGCGCAGAATGAGGATCATCGACAACGAGCACTCCGTAGCCGTAGTCGTCATCCGCCCCCACCTCAAAGAAGAAACCCGCCAGGCCGCCCAGAACGCCGTCGACCAGCTCCGCCGTGGCCTGCCAACACCGGCCACCTACCACACCCTGCAGGAACACATGGCATCCATCCCCCAGAGGGAACTAGAACTGGCAATCAACGCTGGCCACGCCATCGAAATCGCCGGTGACCTGCACCAGTGGATCGGCCCCTACCATCCCCAACGAGGTATCGAGCCTCTTGCATGACCATCCAGACCACCAAGCAGCGACTCATCGATAAACTGCTCAAGACCATGGTGTAAGGGTCAATGTCACAGGAACGAGAGCTTAAAACCTTGAACGCCGAACCAGGCTCGGCGGTCGCTCACCGGGATGGCCGAGGGCAACAGCGTGAGCAAGATCCCGCTGCACCTCACGACCGAG # Right flank : TGACAAGGCGCTCAGCAACGTCCGTGCGGTCACCGGCGTGGCGGTCGCCCTTAGACGCCATTTCAGTTGGGGTGATCTTGCGGCAGTCTGGGGTGATGACTGCTGCGCTTGTCGAGCGGATGGCGCCGGAAGAGCTGTGGACGTTGTTCCAGCGGGTGGTGCCACCGGCACCGGTCCGCCCGCAAGGTGGAGGGCATCGCCGGCGAGGGGACCGCGAAGTGCTGGCCGCGATCGTTTTCGTGGCCACCTCGGGCTGCACCTGGAACCAACTCCCGCCGGGCTTCGGTCTGTCCGGGGTGACCGCCTTCCGGCGGTTCACCGAGTGGACCGAGGCCCGAGTGTGGGCCAAGCTCCACCGCTTGGTCCTGGACGAACTCGGCACCCGGGGTGAGCTGGACTGGTCGCGGTGCGCGATCGACTCCGTCAGCGTCCGGGCCCTCAAAGGGGGCAGCTGACAGGACCGAATCCGACCGACCGCGGCAAGAAGGGATCGAGGCCAG # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 915071-915339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000002.1 Streptomyces sp. SAJ15 Seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 915071 30 96.7 31 .............................G CGGGCGACCGACGCAGCGCACTCCGTCGCCG 915132 30 100.0 31 .............................. CGCCAAGAAAGCAGCCCAACGCCATTCCGGC 915193 30 100.0 31 .............................. TCTTGAGATCCCGCATGAGCTGACCGGCGAG 915254 30 83.3 28 .......................CCGAG.. GCAGGCTGGTTTTACGGCTGTAAAACCC 915312 28 76.7 0 .................C...T--AC...G | ========== ====== ====== ====== ============================== =============================== ================== 5 30 91.3 31 GTGTTCCCCGCGCGGGCGGGGGTGGTCCGA # Left flank : CGTCCTGGCGGCCCTCATCGTGGCGATCGAGGAACCGAGAGAAGCCGCCCACCGCGCCCAACAGGCGGCACGCGAGCTCCGCGCCCCCGCCCCCTACTTCGGCATCGAGCCGACCCTGGTCTGCGTGCACCCGGTCAAGGAACTCAGCAAGGTCCCCGTGGAAGGCGGCGAGCTACGCCCCGACCTCCCCTACCTCCTCCTGGGCAGCTCCGGCGGCACGAGCGTCCTCTGGGACCGCGCCCCCGGCCAACCAGAACCGATCAAGGTGCCCACCTCCACGTTGCGCATCGTTCCGCTGCCGAAGGGAGAACCGAACTGCCGCCCGGCGGCGACTCGTCGATGACGGCGGCGCCCTCGGCTACCACCCTGCTCCCCACCGCAGCGTCCGCCGCCTGAACCGAACGATCCCATTGCTGTGGCATCACGTCTGCCACTCTATGTACGGTGAGAATGAGCAACCAGAACGGGCAAAGTCCCACTAGCGCCGCAGCTCAGGAAGC # Right flank : GTGGCAGCCGGGCTTGGCGGTCATCCGAAGGTTGCCGACCACTTGCCGCGGGTGAAGTGGATCCGGCCGTCGGGTGTGATGCGCACGTGGCTCCCGTAGATCGGCAGGGTGCCCTCGGCGTTCAGCCGGTGTCGGATGCGTTCCAGCACCGTCCATAGCCGGCGCGGGCCGCCTTGGTGGACGGTGGGGGGTTGAAGCCACGTCGCCGATGCGCGTGCCCAGGATCCGTCAGCGTGTACCAGCCACGTCGTGCGCCGCTCACCGTGTTCCTCGTAGTGGGCTTCGACCCCGGGGGCGGTGAGTTCGAGCATCGCGCCCACGTCCCACGCGTTGGAGACGTTCAGTACCGGGTAGCGGCCTTCGCTCACCACCTCGCCTTCCCGATCGCGGACCGCGGAGAGCGACGCCCCGGCGTCCGGGGGGTAGTCGGATCCGGCGCGGGTGCTCATAAAGCCGGCCCGGTCCCACTCGACGACTCCACGAGCGGTGCCGTCCGCGTC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGGGCGGGGGTGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 439973-441270 **** Predicted by CRISPRDetect 2.4 *** >NZ_NISY01000005.1 Streptomyces sp. SAJ15 Seq5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 439973 29 100.0 32 ............................. GCCTACCAGGCCGACCTGTACGCCCTCCGCAC 440034 29 100.0 32 ............................. GACGGCGGCCAGACGTGGACGCCGGTGCGGCT 440095 29 100.0 32 ............................. GTGCAGGCCACGGCCGGCCATGTTCCGTAGCT 440156 29 100.0 32 ............................. CCCCACTCGAGCAACTGGATCTGCCTGGTGCT 440217 29 100.0 32 ............................. GTGTACGGGGCCCTGTGATGAGCACGGGGGAG 440278 29 100.0 32 ............................. CTCCAGTTCGCGACTCCGCGCGCGGTGCAGGA 440339 29 100.0 32 ............................. GGATGACGGTGCGCCGGCGGTTGGATGCCGAT 440400 29 100.0 32 ............................. TGATCACCACCCCCGCCCGGAACGCCATGACC 440461 29 100.0 32 ............................. CTGGCGAACGTCGGCGTGGGTGCCGTCGATGG 440522 29 96.6 32 .........................C... TGGCCAGCTTGATCCCCACCCACTTCTTTGAG 440583 29 100.0 32 ............................. TCTCGCAGTTCCTCGATCGCTGTCATCGGCTC 440644 29 100.0 32 ............................. TGGTCGTGCAGCTGCGGCGAGGTGGGGGTGCC 440705 29 100.0 32 ............................. TTCAGGTCGATCAACACCAGCCGGTCGCTCTC 440766 29 100.0 32 ............................. GAGCTCTTCACCGACAGCGTGATCTCGCTGGA 440827 29 100.0 29 ............................. ATCACCGGCAGGCCCTGATCATCCGTACT 440885 29 100.0 32 ............................. GGCCCGCCGAGTGCGCTCCTCGCTGCTGGGCA 440946 28 86.2 32 ...A.....A......-T........... GGCACCACCTGGACCATCGGCCGCTCGGACAC 441006 29 93.1 32 ......T.........T............ GCACGCGACCTAATCCGCATCGACGTCCCCTT 441067 29 96.6 32 ...A......................... GGAGCATGCGGGGCCTCGCGGCCGCGCTCGGC 441128 29 100.0 86 ............................. GGAGTCAGCCTGCCGCCGGGGACCGCGGGTAGGTGGTCCCCGCGCGGTGCTCCCCCAGGACATGCTCCAGGCCGTTCTGGAGCGCC 441243 28 72.4 0 ...........C..CA.-A...C.CC... | ========== ====== ====== ====== ============================= ====================================================================================== ================== 21 29 97.4 35 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GTCGCAACTACGGGGAGGAGCCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCGGCCGGCCTTCGGGGCTTCCTCACCCGCTGGCTTCTGGAGATCTCCCCCGGCGTCTTCCTCGGCTCCCCTTCGGCTCGCATCCGCGACATCCTCTGGGCCGAAGTCCGCCAATACGCGGCCCAGGGCCGCGCCCTCCTTGTCCACCAGGCCGACAACGAACAAGGCTTCACCTTCCAGACCCACAACCACGCCTGGCACCCCACGGACCACGAGGGCCTCACCCTCCTCCACCGCCCCGCCCCCAACACCCCGCACAACCACCCCCCACGCCAACCCACCCCACCCCCACAGGGCTGGAGCAAAGCCGCCAAACGCCGTCGTTTCGGACAGCGGTAGCGTGCAGGCGGGCTCCACCCGAGAGGACTCAATGACCGCTATGCCGGAATCTCCAATCCTAAGCAAAAACGGCACCCACGCCGCATAAAGGCGCAGGTCAGCTTCT # Right flank : CGCTGACAGGTCACGTGCAGGCATGAGCTACCCGCAAGCGGGGGCCGGTGGCCGGGCCGGGGGTCAGCTCGTCGGGAGGGCCTTGCGGAATTCGTCCGTCGTGGTCAGGAAGGCGTCGCCGGCGAAGCGGAGGGTGGCGAGGGAGCGTTCGCCGGCTTCGGGGTCGCCGGGGCCGCAGGCGTCGGTGATGACGACGGGGAGGTAGCCGAGGTCGGCGGCGTGGCGGACGGTGGGTTCGATGCCGATCTCGGTGGCCACGCCGACGACGGCGACGGTGGTGATGCCGCAGTCGCGCAGGGCGATGTCGAGCCAGGTGCCCTCGAAGGCGGACATGGTGATCTTGTCGAGGACCGCTTCGTGCTCGGTGGGGCGCAGCTCTGGGATGAGCTGGGTCTGCGGGGCGTCCGGTGGGAAGGGGGAGACGACATCGGCCGCGCGTTCGGTGCGCTGCCAGCTGCGCCACATGCGGAGTTGGGAGACGCCCATGAGTGCGGTGGGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //