Array 1 266-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKGP01000048.1 Staphylococcus epidermidis NIHLM053 HMPREF9988_contig00051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 265 36 100.0 34 .................................... CTTTAATGGTTTTAAAGTAGTATCTGCCATAAAT 195 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 123 36 100.0 34 .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TAATTTTCTAATTCTATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 312-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKGP01000025.1 Staphylococcus epidermidis NIHLM053 HMPREF9988_contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 311 32 90.9 38 C...-.................A.......... TCACCGACGTTTTATTACCTATTGAGCAACTATTACCG 241 33 100.0 36 ................................. TCTACAAATGAATTAATCAGTGACATGAAAGATGAG 172 33 100.0 38 ................................. TCCCTAAAATATTTTTATTAGGTAATGCCGTTAACTTA 101 33 100.0 39 ................................. TCTAGAAAAAAGGAGGGTGTTATTCATGGAAGAAATATA G [82] 28 28 72.7 0 .......................GTAG.----- | ========== ====== ====== ====== ================================= ======================================= ================== 5 33 92.7 38 TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGA # Left flank : GAACTAACATCTTTTGCTAAGTTTACTAATAACTTCACATTCTCATTATGTAAATTGTTTTCTAAACATTTTGATTGATTAATAATTTTATTTACAACAATCTTTTTCCAAATTCTATCTCTAGTTCTCCCAGATAATTGAAACTGACTTTGAATCCTTTGAAGACGATGAGTCATACCATAAGAAGAAATAAGTTGCGTTAATGGAGAGTGCTTTTTATCACAAAAAATAATAGCGATATCATTTTCTATACATTTAATTACTAATTTATGAGAAAAATAGCTTTTATAATGATCAAAAATAATCGCTTCTATTTCTTCAAACAAATAAAATTTCTCACTTTTATCTATTACATTTCTAAATTTAATACTATTTTCTTTCACGGTAACAAAGTAATGATTTTCTACATAAATAACATCTTTCATTTTTCATCCCCTAAAAATTAATCAATGCGTATTCCATTAAAAATTTACAAATTTTAGAGTGTAATTAAATTTACA # Right flank : T # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 9037-9358 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKGP01000025.1 Staphylococcus epidermidis NIHLM053 HMPREF9988_contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 9037 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 9108 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [9123] 9183 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 9252 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 9325 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //