Array 1 658077-659420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDNP01000003.1 Paeniclostridium sordellii strain UMC178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 658077 29 100.0 36 ............................. GAGTTTGTTATAACTTCAAGACCTTCAAGAGGATCT 658142 29 100.0 38 ............................. TAAGGTACGCCTATTATAGCTTTGTCTACTGGCAAAAA 658209 29 100.0 37 ............................. TGAATCACATTCCCCAAACCTATCATTATCATTTATA 658275 29 100.0 37 ............................. TTGGTATATAAAAATTAAATTTATTAACGTACTATAA 658341 29 100.0 37 ............................. AAGATTTTTCCTAGAATGTGAATGTGATAAAGAAATT 658407 29 100.0 36 ............................. AGGTGGATTGAAGGTTTTCCCACACAACACACTATT 658472 29 100.0 36 ............................. ACTCTAAGGTGGAGACAGAATGAAAATAGGTAAATA 658537 29 100.0 36 ............................. ATTAAAAGAATACATAGATTTCTTTAACGTAGAATC 658602 29 100.0 37 ............................. CTAACAATGGCTTATCTTACATATGGCGTTATGATAA 658668 29 100.0 37 ............................. ATCATGGTTAATAAGCATAAACTTATCTCTAGTCTTG 658734 29 100.0 37 ............................. TTAATTAATAAGTATCCAATTATAAAAGAAAGACATA 658800 29 100.0 36 ............................. GAGTTACTTGAATGTCCTTGAATAACTCATTCAATA 658865 29 100.0 37 ............................. GAGATTGTTGTATATTGAGTTTTTTAATTAACATATC 658931 29 100.0 37 ............................. TTTATATTAATTTTAGCTTCTGTATTTTGACCTTCTA 658997 29 100.0 39 ............................. GCGGGTATAAAGTTTCCGCTAGTGTTCTCATATCTCCAT 659065 29 100.0 35 ............................. CCGACTAAAACTAAAATAAAGTTAAATAGCCACGT 659129 29 100.0 36 ............................. ACAAAGGAAGCTCAACAAGCAATGGAGGAGTACGGA 659194 29 100.0 37 ............................. GCTATTAACTAGGGCTTGTACATTCTAAAGTATTTAT 659260 29 100.0 37 ............................. GAAGAATGGGGTACAATCTTCAAATATTTCAGTGAAA 659326 29 100.0 37 ............................. AACTAAAACTGTTGATAACACTAAGATGTTAGAAAAT 659392 28 89.7 0 ....................C..-...T. | C [659412] ========== ====== ====== ====== ============================= ======================================= ================== 21 29 99.5 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TAGAGGATAATTTAATAGATGAATATAAGTATTTAGGGGAAGAACTAAGTGCTGCGTATAACAATAAAGATAAAAAGTTGATAAGTGAATTAAAAGATAAAAGAAGAAGTATAAGACAACAAATAACTAAGAAAACTGTAAGTGTATCAGCTTATAAGGTGAGACAAAATAAGTTAATTAATAATATAGATGTAAAAGGTTTAGAGGATTTAAAGATATTAGAATATGAGTATGATATGAATTATGAAATACTAAAAGGAAAAGGTGTACTTCTGGGAAAGGAATTATCCCAATTTATATAATTATTGAACTTTATATTTTGCAGTGGGCGTAGATAATGGTAAAATAACTATAAATACTTGCAATTACTGATGTTGGAAGAGTTTTCAATTGTTTTTAAAATACTTTATTTGTACTTCACTGCAAAATATTTAAATTTTAAAATTAAATTTATTATGAAGAGGAGTATTTTCAATAGGTATAAGAGGAAATATTTTGGG # Right flank : TTTACTAAAAGGAAGGTGGAATAATGTCCATAGATTTAGAAGACTTAAAAGTACAAGGAGTAAAAATAAACTACTACTATATATGTAAACGAAAGTTATGGTTATTTTCAAAAGGTATAACTATGGAACAGAATAGTAATAGGGTAGAGTCTGGAAAAATTCTTCATGAAAATTCATATAAAAGAATGAAAACAAAAGAAGTTTTAATAGATGATATACTAAAATTAGATATTATAAAAGGAGATTATGTAAGAGAAGTTAAGATAAGTTCTAAAATGCAAGAAGCTGACGAGATGCAATTATACTATTATCTATACTATTTAAAAAAGGTTTTAGGAATAGAGAAAAAAGGACTTATAAATTATGTCAAAGAAAAGAAACAAGATGAACTAATATTAACACCACAAATAGAAGAAAAAATAGAGAATACACTTGTAGATATAAAAAACTTATGCAAAAGTATATCTCCTCCTAAGTTAGTAAAATTTCCATATTGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 661394-662735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDNP01000003.1 Paeniclostridium sordellii strain UMC178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 661394 29 100.0 37 ............................. ACTGGTTATTTTGAAGGTATAGCAAGTGTTGGAAATG 661460 29 100.0 36 ............................. AAGTAATTCGCCATATATTCAGCACTCTTGCCCATA 661525 29 100.0 36 ............................. ACTTTACATAATGGCTATGTTCCTTGTAGTGAAAAT 661590 29 100.0 36 ............................. ACTCTAAGGTGGAGACAGAATGAAAATAGGTAAATA 661655 29 100.0 36 ............................. CACTCAATAGGTGAAGGAACAAATATTCAAAAAGAC 661720 29 100.0 37 ............................. TGTGAGTTAATAGGTAAAGTAGCTGAAAATTTAACTC 661786 29 100.0 36 ............................. GTAGGAAAACCAGATATAAAGGAATTTAATAGAAAT 661851 29 100.0 37 ............................. TCTTAATAGTAGCTAACTTTATAAATATTGTGGATGA 661917 29 100.0 36 ............................. CTAGCTTTTAATGTAAGTGGAGTGGGTTATAACAAA 661982 29 100.0 36 ............................. TACGGTGTATTTGCAATAAGTTTACCAAATGGTGTT 662047 29 100.0 37 ............................. TAGTCTTTATACATAGAATCTATTAATTTTTTAATAT 662113 29 100.0 38 ............................. AAAAAGTAAGCTTGAAGAATCTAATAGAAAAAATGAAA 662180 29 100.0 36 ............................. TGTTTTGTTGTTCCGTAACCTATGGTCCAATAACCA 662245 29 100.0 37 ............................. TAAAGCATACATTCAAGAGTGCTTTGTCAATGCAATG 662311 29 100.0 37 ............................. TATATACTTTCTTCTGTCTATTATTAAACTTAGATTC 662377 29 100.0 38 ............................. CAATACTATTAAGTACATATTAAACACAACTAAATATG 662444 29 100.0 36 ............................. TTGGGTACAGATCAAGTGACTGCATCTTCAATAGCT 662509 29 100.0 37 ............................. ACGTATCTATCAAGCTTTTCTAAAGTACATATATCTG 662575 29 96.6 37 ............................T TTTGTAGTGTGACCGAAAGGTAGATTAGTTAAATTCA 662641 29 96.6 37 ............................T AGAATTAAAATATCTGAAAATGTTGAAAAAGTTACTA 662707 29 89.7 0 .................C......C...T | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AAGCATTTTATAAAAGATGAAAAATATAAAGTTTTGAAGGCTTGGTGGTAATATGTTTGTTATAATTACTTATGATATTGTAGAAGGTAAACCTTTAAATAAAACTAGAAAAATACTTAAAAAATATTTAACTTGGACACAAAACTCTGTTTTTGAAGGCGAGATAACAGAGAGTAAACTTCAAAAGTGTATGTGTGAAATTGGTAAAGTTATAAATGAATATCAAGATTCTATTTATGTTTATGAGGTTAAAAATCCTAATAATATTAATAAAAAATCTTATGGAGTACATAAAAATTTTGATGATATGTTTTTATAGTTTGCAGTGAGCTCAAAAAATGATAAAATAAACTGTAATGATTGAAAATACTTAATTTTAAGGCTGTTATATTTATTTTGTAAATACCTTATTGATACATCACTGCAAAAAGCTTATTTGTAAATTAAAAATTATCTTTAAATAGAGTTATTGCAATAGATGTATAATAAGAAAATTTGGG # Right flank : TATAAGAAAAGTAGAAATATATACTAGTTTCTTAAAAGTTTTATAATATATAAAAATATGTACTAGTTGTAATTATATTTTGACTTGTAATTGTGTAAATCAAGTTTTTACAAAATGCTTGATTAAGTTATGCTTAAATTATATAAGTTCTAGTATAAGTTAGATAAAACATATTAATTTTACTTTAAAATATATACGAGTAATTAAATGAAAAACATTTATGGCTAATGTTAAACTCAAGAGAGAGTAGATTAAAATTTAAATCTACTCTCTTTTATTTTTGAAATTTTTAGATTGATAATATAAACAATGTGGTAAATATATAAGTATATTAGAATTTAAAAAATGAAAAAAGGGATGAAATTAAATGAAGAAGATAGGTATAATTATAACTTTAATATTATTAGTTGTAAGTTTGGTAGGATGTGAAAATAGTGAATCTAAAAAGGCAGTAGAACAAGGTAAAGTAGAAATGAACAACAAAGAATATGACAAAGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //