Array 1 873658-874156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021703.1 Lactobacillus johnsonii strain UMNLJ21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 873658 36 100.0 30 .................................... AAATACTTGTGTGCCAAATGTGCGCCAACT 873724 36 100.0 31 .................................... TCTACCAGCCGCTTAATGCTACATTCAAGCA 873791 36 100.0 30 .................................... CAATTCTTCCAAAAATTAAAACTAGAGAAA 873857 36 100.0 30 .................................... ATACATTCCCAATTCTGAATGCTGGCGAAA 873923 36 100.0 30 .................................... TCGTGCAAGTATTCAAGCTAACTATGATGG 873989 36 100.0 30 .................................... CAATCAAGTTACAAATGTCATGAATACGGC 874055 36 100.0 30 .................................... AGAGCTATTGTTGCTCCGGAAGATGATAAT 874121 36 83.3 0 ..........................A.A..GC.GG | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.9 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : GGCTCAAGACCAAGTAACTAGTTTTAACTAGTTGTTAGATCAAAATATTTACTCTTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGCTTTATTGAATTTGGAGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACTGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGTGGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 878857-880714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021703.1 Lactobacillus johnsonii strain UMNLJ21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 878857 28 100.0 33 ............................ TTACTGGTTGTGATACAGGTCTTCCATCAACAT 878918 28 100.0 33 ............................ TACGATTATCAGCACTTCTTAAAGGATCTTTTT 878979 28 100.0 33 ............................ CCAATTAAAGTTGAAGAACACGAATAATGTATA 879040 28 100.0 34 ............................ ATACGATCCAGTAGGGTTGTCAGAAATTCTTTTG 879102 28 100.0 33 ............................ TATTGGAGACGATTATATTTATTCCGATACAGA 879163 28 100.0 33 ............................ TCTCTAAACGTTGAGACAAGTTAAAAGCTGGGA 879224 28 100.0 33 ............................ CAAACAAGAAACAAGCGAAACTTTACCAAATAA 879285 28 100.0 33 ............................ TTTGACAAGTACGGTGAAATTGCATTCGATGAG 879346 28 100.0 33 ............................ CATGCCTTTAGCGTGTAAATATTCTGCCTCTTT 879407 28 100.0 33 ............................ TAAAAAAGTCCTTTCCATGCGTACTAGAAAAGA 879468 28 100.0 33 ............................ CATACATTGCGTTGGCTCTATGAATGTCTCCAA 879529 28 100.0 33 ............................ TTATCGTCAGAAAGTCTCTTGATTCTCTTGGTA 879590 28 100.0 33 ............................ TATCTGTCAGCATCCATACAGTGGTCATGCTCT 879651 28 100.0 33 ............................ TGATGCGGTAGTAAGCGAGGTGATGTGGGTTGA 879712 28 100.0 33 ............................ TTACTACATTACCAGCAGGGTCAGTGGTTAAGT 879773 28 100.0 33 ............................ TTTGTGGCAAATAGGTCTTGTAAAGCTTTGAGC 879834 28 100.0 33 ............................ TATTTAAGTTATCAAGAGCAGTGCGTAATACAC 879895 28 100.0 33 ............................ CCCGTTTGGACTGCTTCCAATCGTTGAAATCAA 879956 28 100.0 33 ............................ TTCACGTATCTCTTCATCTTTCTCAGCATTCAA 880017 28 100.0 33 ............................ TAATAATTAGTGTGCTTGTCACAGTACCTTTTA 880078 28 100.0 33 ............................ TGTCGTTGACGTTGGTACTGAAATTTTTGATAC 880139 28 100.0 33 ............................ TTCTTCAAAGCTGCATTAAATGATAATTGTTGT 880200 28 100.0 33 ............................ TAATTATATAAACAATTTTTATTTTTTTATTTG 880261 28 100.0 33 ............................ TAAGTCTACTGGCTTTTGCGTTGGGTGAACATT 880322 28 96.4 33 ..............A............. TAGTGCAGCGTTGTTCTGTTGGATCAGCAAGAA 880383 28 100.0 31 ............................ TAATACGAGAAACATTAATACTAGTAAAGAA 880442 28 96.4 33 ..............A............. CAAGCAAGAAACAAGCCAAACTATATCAGATAA T,T [880445,880447] 880505 28 89.3 34 ..AT..........A............. CCAATCGAGAGAAACTTAGAAGATTAGGAATTTA 880567 28 89.3 33 ..AT..........A............. TAATCGTTTTCTATATTTACCAGATGTCACTCC 880628 28 85.7 32 ..AT..........A......G...... TATTCCTCTAACTTGGCTGATGAAGTAGCCAA 880688 27 71.4 0 ...T.T........A.A.A.T..-.A.. | ========== ====== ====== ====== ============================ ================================== ================== 31 28 97.7 33 GTGATCTCCACGTATGTGGAGATGATCC # Left flank : TCATCAAATTTTTTTCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCATTATCTAAACTTGAAAAGCTAGAAGAAGGAGAGAGTACTCCACAAATTGTCTCGCAAGATTTAACCCTACAACATTTGTATTTTAATTTCCCGAGTGCTCATAGTTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGTATGACCAAATATCATGAGATGGTATTTAGTCTTTGGTTTGGCTAAGGTGTGGTGCAGCATTCGATTTTTTGTTGATAGAAACTGATTAAAAATGATATTATTCTAACTAGAGAACGGCATCACAGCAAGGATCTTTTAGT # Right flank : CTAGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGAGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATGGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGTCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTCATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAAGTTAGTTACAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCTCCACGTATGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 890817-893046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021703.1 Lactobacillus johnsonii strain UMNLJ21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 890817 29 100.0 32 ............................. CTAAATTCAAAGCTAGGATCACTTAAAGTTAA 890878 29 100.0 32 ............................. AGATTATCTGCGTTAGAAGATCAGAAAAAGGA 890939 29 100.0 32 ............................. AATTAGCTTCAACAGCAGGATCGCCACCACCA 891000 29 100.0 33 ............................. CATCATCTGAACTCGTACTAATAAATTTGATCA 891062 29 100.0 32 ............................. AAATGCCTTTGATGGACTTACATAGGTAAATT 891123 29 100.0 32 ............................. ATCAACGCTATTCCTTTTGATTTCTAGAGAAT 891184 29 100.0 32 ............................. ATTTTTTCTTTTTTGTTTGTGTCGCACTGCCA 891245 29 100.0 32 ............................. TATTCTTCTCCTTATTATTAATTATTAAAATA 891306 29 100.0 32 ............................. TAGTTTTGGATACTTTATATCTACTCTTTATA 891367 29 100.0 32 ............................. TTAAATGATAGTTATGGTGAGGCTTTTGGTGG 891428 29 96.6 32 ............................C CAACTCCTAAGACTTGGACAGATGTTCAAGGA 891489 29 100.0 32 ............................. ATCCTTATCAGGATTTTTTATAGGTGTAGTTT 891550 29 96.6 32 ............................C AGCCCAGAAACTCGATTCACGTTTTGCATTTG 891611 29 100.0 33 ............................. GAAACAAGCTCAAGCTATTGCAGATACAGTAGA 891673 29 100.0 32 ............................. GAATTTGATTTTGTTAAGTTGTGTAGACAAAA 891734 29 100.0 32 ............................. AGAAAACGTGAACAAACTTATTAAGACTTTAA 891795 29 100.0 32 ............................. TAAGAGAAGTAAAGAAGTAGGAGGTAAGTAGA 891856 29 100.0 32 ............................. TTCATCTGGGTCTAAGCGGAATAATGGTAATT 891917 29 100.0 35 ............................. CAAGCAGAGGCTGAATACGGAATTGGTGGTTTAGT 891981 29 100.0 32 ............................. GGAACTGATGAACTCTACTTTATAAGGTAATT 892042 29 96.6 32 ............................C AGAAAAACCAATTCACACTATAGACCAACTTC 892103 29 100.0 32 ............................. AATATCTGATAGTTCTTCCTGATCAGCACGAT 892164 29 100.0 32 ............................. AAGCGACTTACGAAGTTGAATGCTGAAAAAGA 892225 29 100.0 32 ............................. TGCATGTTCAAAGTAGGTCTGCGTCTTAGCTG 892286 29 100.0 32 ............................. GAACGATCAGCGAATTGATATGCTGATGTGTT 892347 29 100.0 32 ............................. AAAAGAGACGTTGCCTGGCAATACAGTACGTC 892408 29 96.6 32 ............................C TTGTGCCTGATTTAGATCTTGGAGACATGACT 892469 29 100.0 32 ............................. TAAAACATCTTTTCTGAAATTTAAAAGTTCTA 892530 29 96.6 32 ............................C AAGAATAGTATTTGGGAACAATGGAATAATGA 892591 29 100.0 32 ............................. GAAAGGCACACGTCCGAAATTATGTTTCAGAG 892652 29 100.0 32 ............................. AAAATTAACGCTGTTAAAAAAGAAGGCAAAAG 892713 29 100.0 32 ............................. ATCCTGAAATACAGTAACAATTCCTGAAAAAG 892774 29 100.0 32 ............................. ATACACCTTGAAAACTACCGTTCAAGTATAAG 892835 29 100.0 32 ............................. GAATGGCTTGAAGGGCAATATTCGTAAAGCCA 892896 29 100.0 32 ............................. GAACACAATAAAGCGAACTCTTATCCTAGAGT 892957 29 100.0 32 ............................. ATACCTTGTCATACAGTATGTTTGCGTTTTAT 893018 29 89.7 0 .....................C..C.T.. | ========== ====== ====== ====== ============================= =================================== ================== 37 29 99.3 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : TGATGCCCCCAAGTATGAAGATTTTGCAGCGCCTTGGTGTTGGCAAAATTACTAACTCGTATTATCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTATGTTAATCAGTTGAATGACTTGATAGTTCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAAATGAAGGGACAAGTGAACGTAGTTTATTAGAAAGAAGAACAATGGCACTATGCTAAAAAAGCGATTCACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGGACGCGCATAGTAGTCAGATAGGTGTGGATGCAAATATCGCCTTGCTTGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTTTGGTTTTTTCTCAAGGATAGGACTTAAATATTTAATAAAGATAATTCAAATCATCATCCCTAAATACAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //