Array 1 55268-55418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000027.1 Pectobacterium versatile strain KC01 27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55268 29 100.0 32 ............................. AACACCATATAAGCGGATAGTCTTCAGTGGCT 55329 29 100.0 32 ............................. TTTCTTGGTCAGAAAGTGGATAGCGGAGAAAT 55390 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGTAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACGTGTTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GAAGAATAGAGATGTAAATTATACCGGTTTCCATCTTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAATAACAGGGAAGGCATCAGGATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATACAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCCGCTAACAACCTGACGAGTATCGTACCGTTCCTCGGGGGTAGCACTTCGCGTAAGGATTATGAGGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1952-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000004.1 Pectobacterium versatile strain KC01 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1951 28 100.0 32 ............................ GTCTCCGGGAGCAACTGATCACAACAGAAAAG 1891 28 100.0 32 ............................ AAGGCATGGCCAACCCCGTGCCTTTCTTTTAT 1831 28 100.0 32 ............................ AAGCAAAAAAATAAATAACTTTACTAATCATT 1771 28 100.0 32 ............................ ATGAAAGTGCTGGTGAAAGACGGTAACAAGAT 1711 28 100.0 32 ............................ ATCATCCGGGCATCTTCTGACGACGTGAAAAA 1651 28 100.0 32 ............................ CGTATGTCAAAAATCGTAGATACCGATGAAGC 1591 28 100.0 32 ............................ GGAAGAATTCCCATCAATGTTAAAGAGCGCAC 1531 28 100.0 32 ............................ ATAGGAAGGTGTCTACTACGTAAATATGACCA 1471 28 100.0 32 ............................ TCGCCTGCATCAGCACCGTCTACGCACAATGC 1411 28 100.0 32 ............................ CAACCCGCTTCGGCGGGTTTTTTGTTGCCAAA 1351 28 100.0 32 ............................ AATCGCCTGTTAGTGAACACCATTCGTTCACG 1291 28 100.0 32 ............................ ACTATTCGCCCGCCCCGTTCCATCAGCCTCAG 1231 28 100.0 32 ............................ GTTAAAAGCAACACGGGCAGCCAGAAGCGATA 1171 28 100.0 32 ............................ TCTCCGAAAGTGGTGCCGCGAGAATGGAATAA 1111 28 100.0 32 ............................ AGCAGAGTAAGTGCGGATAATTACTGGCTTGC 1051 28 100.0 32 ............................ AGCGCGACGGGATAATTCCGCGCTAACGTTGC 991 28 100.0 32 ............................ GACCAGGTGCGCCAGATTCTGGCCGTGGAAAA 931 28 100.0 32 ............................ AATAGCCGTCATCGGGGCCGTTCAGGAATTTG 871 28 100.0 32 ............................ AGAATGACCAGCAGGGATGTCGGTGGATAGAC 811 28 100.0 32 ............................ CGGAAATCGGCGGGATTTTTTTTGATGCAATA 751 28 100.0 32 ............................ GCGTTCCGATTCGTCAGAATCAAGACAACATC 691 28 100.0 32 ............................ ACTATGTTGATGGGGTATAAAATGGCTGAATT 631 28 100.0 32 ............................ TGGATAACGCTATTCATGTACTCAACGAGGAT 571 28 100.0 32 ............................ GCCTGGGGCAGCGATAAGCACCTGTTCGCCCA 511 28 100.0 32 ............................ TCCAATGAGTTTGACCGTCTTCTGAATAACCT 451 28 100.0 33 ............................ CCTCTTCAACACTGTTAAACGGGCAATGAATTA 390 28 100.0 32 ............................ CAGTCAAGATCGGTGGGCGTTAAGCCCAGTAA 330 28 100.0 32 ............................ TGATTAGGGATGAGGGCGAAAACAATCTGATC 270 28 100.0 32 ............................ TAGGAGCGAAAGACTAGTGCCAGTAGCATCAT 210 28 100.0 32 ............................ AGTGGTGCGAGCAGCGTGATAGGCACCATGTT 150 28 100.0 32 ............................ GTGCAGATCCCCAGTGGTTATTGGAAAATTTT 90 28 100.0 32 ............................ CGGCAGAATGGTTAACTCACGGATGCTTATCG 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGGGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGATGCCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAGACTCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGACGAAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : AAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10920-11967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000004.1 Pectobacterium versatile strain KC01 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10920 28 100.0 32 ............................ CTGGGGTGAAGGGGTAAGAGGGGATACCGCCC 10980 28 100.0 32 ............................ AGAAGTAGAAATCGAAGAGCAATCACTTGAGC 11040 28 100.0 32 ............................ ATGTGTCGAGCGAATGCGGATTTGTTGCCGGA 11100 28 100.0 32 ............................ TCGCGCCTTGAGCGCCTCAGGAATAGCGGATT 11160 28 100.0 32 ............................ TTGACGGCTTCGGCTACTAATTCAAACATGGC 11220 28 100.0 32 ............................ CGACGCGACGGAACGGCGTGGCGTCCTTAGCG 11280 28 100.0 32 ............................ AGCATGGTTAATGCAGGAACCTGCGAACTCAA 11340 28 100.0 32 ............................ TATCATGCCTAGCGTTGACTAATTTAAGCATC 11400 28 100.0 32 ............................ TCCCCCATAGCGCCACACAGGGAGCCTAATAT 11460 28 100.0 32 ............................ CGTAAGGGACAGAATAAACTCGGTGAATGCTA 11520 28 100.0 32 ............................ GATCACGTATAGCCCATCTAATTACACCGAAT 11580 28 100.0 32 ............................ TGTCCACGCGTCTAGTTATGTCAGTGAACGGC 11640 28 100.0 32 ............................ TTATCGAGCTAATGAACGCGTTTGGCGCGGAG 11700 28 100.0 32 ............................ GAACTGCTGATTGACTGCATCGTGCCGGAAAT 11760 28 100.0 32 ............................ GAAACCAACTTCCATACACTGGATTGCGCCAT 11820 28 96.4 32 ...........T................ ATTGGACTGATTCGCTAGCGATCGCTGAACAT 11880 28 96.4 33 ...........T................ GAGTAGTTCAGATAAATACATGTAAATCATGGT 11941 27 78.6 0 .............C.....-A..C.GT. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTGACCCTTTTTTTACGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCACCAAAAAAGTCATATTCTCTTTAAAAATCTGGTGGTTATCTTAAAACCTTAACG # Right flank : ACTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGACAGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCATTAATCGTTAGTGCCGCTGAGGTGTGCTTGATGAATACCTGCATCAACCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCATCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCGCGCGCCAGAATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8561-6971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000041.1 Pectobacterium versatile strain KC01 41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8560 28 96.4 32 .............T.............. AACCCACCGCAGTAGAAACAAACCAATCAAAA 8500 28 96.4 32 .............T.............. GACGAATCCCCAGCAACAGCAAGTGATAATTT 8440 28 92.9 32 ...T.........T.............. AGGGAAATACACGTATTTCCTATTCCGTGAAA 8380 28 96.4 32 .............T.............. AGCGGAAGAGATCGGCTATGTGTGGCGAGATC 8320 28 92.9 32 ...........G.T.............. ACGATATCAGGAAGCCACAGCGGACGCTTCTG 8260 28 100.0 33 ............................ GCCAGCCAGACCGGAAATTAATGGATAAATATC 8199 28 100.0 32 ............................ GACATCCCCGTCTGTAATTGCTCGATGAAATG 8139 28 100.0 32 ............................ ATTTCGTTTCGTCAGATCCCGGCGCAGACGTG 8079 28 100.0 32 ............................ TTCAAGACCTCGGCACTTGTGGTTCCGGGAGG 8019 28 100.0 32 ............................ CCAGATTGCAGCAAAAGTAAAACGGTCTGAGT 7959 28 100.0 32 ............................ GAATCTGTCATGACGCATTACACAGAGACATG 7899 28 100.0 32 ............................ ACGACCAACAGCGGCAACGCACTGACATTCGT 7839 28 100.0 32 ............................ TGGCACTTTTGTAAAGCACGGGCATTGCGCGC 7779 28 100.0 32 ............................ AACAGCCGCGCTATTAGGTGACGTGTCGATAC 7719 28 100.0 32 ............................ CACACCGGCGGCCAAATGTCATCGAACGGCGT 7659 28 100.0 32 ............................ TTTGGGGTGTTGCTGGGCGCGCGGTGCTGACC 7599 28 100.0 32 ............................ ATGCTGCGCAGCCTGCCGCGAACAGAAGATCG 7539 28 100.0 32 ............................ GTGTAATACTGTGATGTGCTGATATTGCAAAG 7479 28 100.0 32 ............................ GGAGTGCGGCGGGGAAAAGAGAGTGCCCAAAT 7419 28 100.0 32 ............................ TACGTAGAAATCGATAATTTTCAGCAGGCGAG 7359 28 100.0 32 ............................ TAATAGACCATGCACGCAAACAGAACGCCATC 7299 28 100.0 32 ............................ TCAGCAACGGTGCAATCCTGCGTTTTTTGTCC 7239 28 100.0 32 ............................ ACTGGGCTGGAGAAGAAAGGCAACAGCAAGGG 7179 28 100.0 32 ............................ TAAATCGTGCGCCTGCTGCAATATTTACATCT 7119 28 100.0 32 ............................ AAGTGACACAATGGCTGGAAAAAGGATTCATC 7059 28 96.4 33 .............T.............. AATTGCTATTAGCTGGCGGATTGCTGGCATCAG 6998 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACCAAAGGCGAGGCGTTAGCCTTTGAGCAAT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGCGCTGCGCCAAGTGTTCAATGCGTTTACCCCTTAAATAACGCATATTGATGGCCTTATCCCGTAACGTTTTTAAGTAATTAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGGAATAGTTCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCCTGGAAAACAGCAATATTTGGCTGTACCGATCCCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118471-118198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000008.1 Pectobacterium versatile strain KC01 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118470 29 100.0 32 ............................. ATGGGCTACTTGCCCATACCCTTAGCGTTTTC 118409 29 100.0 32 ............................. GGAATGATTATGAAGAAGATTGCAATTCTGCT 118348 29 100.0 32 ............................. CCATCATCATAGTGAGAAATCGATCCCTGCAA 118287 29 100.0 32 ............................. ATGGCAGGCTTCCCCATTTACACATATACATG 118226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : CGATGCCTGCATTGGCTGGGAAGATACAGAATCCCTGCTGCGTCAGCTGGCTTCTGCGGTACGCGAGCGCCGCAGCAAGTAATCCTAATGGCGAGCAGGAAGCTCGCCATAAAAATCCGGCACAGGCATTGAGGAATTCCCACAAATCTGGCGCAATAAATCAGAACCCTACTTTCTTTGGTAGGTTCTGACCAGATTGGTAAGAACAACGTCCAGCGTTATTCATTTTAAAACCAGCGGGAATGTCTCAGGATATTCTCCTCTACTGTCAGCCTATGCTGCCCTCGCTGTCGTCGTAACGGAAAGCGTGCTCACAAAATTCTTCACTCTATTGAATTATAAAGGAAAAATATCTTAATTCGGTAGGGCAGAGTGGAACGCGATTTGTCTATTTTTTATCTTTTTATAATCAATGAGTTATAGATATATACCGGTGTAGAAAAATCGGTAGGATTCTTTATGCTGGAAAAAATGTTATAAAACAAATCTCTATATTTAGA # Right flank : TGCGGTTAACCACTCCAGCTAACAGCAATTACATACCATCAACGGTTACGGGTCAGGAATGCTGTAATAGTATGAAAAGTAGCGGGTGCACCGCGCTGCAGAGTGGTATTTACCACAGCAGGTGGTCGATGCGTTTTATCTTGTTTTTTAGCAGTGCAGTTTCGGGAAGGTATTGTTCGATACAGGGCAAGGTGAGCGATGCGTCATGCGTTAAAGCCGTGTCAGCGTCGAGAAGGGGATTCTGTCGAGAGTAGATGGTATAACGCTATGCCTGTTTTTTTACCCGGCCATTACTGTAGACCGCCAGTAATGGCCGGGTTTTTGTCATTCAGGGGTAAATTACTTCGCTTTACCCTGATTCGCTACTGCGGCAGCTTTTGCAGCGATTTCGTCTGCGTTGCCCAGGTAGTAACGTTTGATAGGCTTGAAGTTCTCGTCGAATTCATAAACCAACGGCACGCCAGTTGGGATATTCAGTTCCAGAATTTCGTCTTCGCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 453-1440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZP010000054.1 Pectobacterium versatile strain KC01 54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 453 28 100.0 32 ............................ TTCCACCGCTGATTTCAGAAACGCATCATAAA 513 28 100.0 32 ............................ TTGCGCTGCCGTCGCTGTGATGCGCTGGTAGA 573 28 100.0 32 ............................ ACTTCATAAATATAACCCCTACGCCACTCCTG 633 28 100.0 32 ............................ ATGACGAGATAGACCGCCGTACACGCCTCACA 693 28 100.0 32 ............................ GCAAAATCAGAAACAAACTCAGCAGACGTAAA 753 28 100.0 32 ............................ TCTCCCCTTGCAGCGGCATGAATTGCTGACCA 813 28 100.0 32 ............................ CCTCACCCCCTCGCCCCATGTGGTGAGTAATG 873 28 100.0 32 ............................ TCTACCTGAGAGGCACTGGCATCACCAGTCTG 933 28 100.0 32 ............................ GCAAAGTCACATCGACAAAAATGCTCGCGACC 993 28 100.0 32 ............................ ACACGACGCAATGCCGCAATGGTTCCTTTTTG 1053 28 100.0 32 ............................ GTGGCGCGTTTCAGCCCTTTCATGCTGCGGAT 1113 28 100.0 32 ............................ CCCATGTCACGCGCCGCCGCAACCCCCTGATT 1173 28 100.0 32 ............................ TGCATCGCTTTTGCCTTCACCGTGGCATCTGG 1233 28 100.0 32 ............................ ATAAACGGTGCTGAACGTCTCGATCCTGTCAG 1293 28 100.0 32 ............................ TTCTAACTGAATGGAACTGTTCGGAATTGAAC 1353 28 100.0 32 ............................ AACGAGCTGAGCGCCGCGCGCGACTGGTTGCA 1413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAATTCAGCCAGCCACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTATATATCCATAGCATATGCAGATACCTGACATAGACCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTACCCTGATAAAAAAGGGTTTTTCGGGAAAAATAGTTTATTTCCTTTTAAAATTAGGTCACTACCGTAAAATATGAACGG # Right flank : AGCACGTTCTCGCGCCATGCGTATATCTGCATGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //