Array 1 4523-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCY01000004.1 Bifidobacterium animalis subsp. lactis strain 1528B Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4522 29 100.0 32 ............................. AGGCGCGGCGTATCGACGATTTCCTTGTGGCT 4461 29 100.0 32 ............................. TATTCGGAGCGGACGCTGCGACGCTGGCGCAA 4400 29 100.0 33 ............................. GCGAACCTGTTGCCGTCCGAGTGCCTGCCGCTG 4338 29 100.0 32 ............................. AATTCCGCGGCGGATATCCTCACGAAGATCAC 4277 29 100.0 32 ............................. GCGCCTTTGCGGATGACGTCGCCGCCGAGGTC 4216 29 100.0 32 ............................. ATGAGCAGGCCCAGCACCGGCAGGTAGCCAAG 4155 29 100.0 33 ............................. GGGGACAGAATAGACCCCAGACCATTGGACCTG 4093 29 100.0 32 ............................. TGCATGTACTGTTTGCGGTCATTGATCTCTTC 4032 29 100.0 32 ............................. GCACTCCAGCATATTCGCCTGCGTCTGCATGC 3971 29 100.0 32 ............................. AGGCGCTCCAACTCGGAGACCACCATCATGTC 3910 29 100.0 32 ............................. CACCAACTACAACCTGTCCCAGTTCGCGGACG 3849 29 100.0 32 ............................. AGCTCGATGAGCTTCAAATATTTCTGAACGCG 3788 29 100.0 32 ............................. CCGATCGGCAACGGCATCGGCGACGCCGACCC 3727 29 100.0 32 ............................. TGCGACAAGGCGATCGATGTGAACCTGGACAA 3666 29 100.0 32 ............................. GCGATCATCATGGCCGGCTGCGCGCGGAACAG 3605 29 100.0 33 ............................. AGTATCTGAACGCGGTCAATGAGAGCGTCATCA 3543 29 100.0 32 ............................. GATTGGATGGTGGGTGGTTGTGTCGCCAGTTT 3482 29 100.0 33 ............................. ACGTCGGCCGCGCCCGTCTGCGCGATCTCGTTA 3420 29 100.0 32 ............................. CGACGCGCTTGAACGCCTCGCATGGTGGGAGG 3359 29 100.0 32 ............................. GGTTCCGCGTTCGGGTCGGCGTTGCCGTTGGG 3298 29 100.0 32 ............................. TCGCTGGCGAACTGGCGGATCGTGTTCATGGC 3237 29 96.6 35 ............................A ACGCGGCGGCCGACGCACACACCGCCGCGGTGAAC 3173 29 100.0 33 ............................. CCCCGGTTCACAGTTCGCCGCTGTCGGCGGCGA 3111 29 100.0 32 ............................. ATCGACATGATGGTGGTCAACGAACTGGAGCG 3050 29 100.0 33 ............................. GTGAATTCGTATGTCTTTCCGGCGTTGTCGAAG 2988 29 100.0 32 ............................. GTCCAGCAATTCAACGACCGCGCAATAAACTG 2927 29 100.0 33 ............................. TGTGGGGCACCTACCATTACGTCGGTGGGGGAG 2865 29 100.0 32 ............................. TTCTCGGTGAAGTAGATCTGTCCCTTGGGTGT 2804 29 100.0 32 ............................. TCAATGGGCACGGCGGCTTCGGACATGACACG 2743 29 96.6 33 ............................A ATACTCTTCCGTGCCGTTGTTCTTGTACGCGAA 2681 29 100.0 33 ............................. CGGGAGACGGCCAGCATCTCGATGAGCTTCAAA 2619 29 96.6 34 ............................A ACGGATCGGCCCATGACGTGTGCGTCACCCATGT 2556 29 100.0 32 ............................. GCGGTGACCTTGGCGAACCCGTATTTCGCACG 2495 29 100.0 32 ............................. GCGTTGCCCTCCTGGGCGGTGATGTAGTAGTG 2434 29 100.0 32 ............................. GTCGGCCACCTATGGCATCGGAGCCGACGGCA 2373 29 100.0 32 ............................. ACCAGCGTGCTCACCACCGACGACTATTACTC 2312 29 100.0 33 ............................. ACGAGCGAGGCGCGCACGGACTTCCAACACTCC 2250 29 100.0 32 ............................. GTCGCGAACATGCCGTCGGTATCCATGGTGTC 2189 29 96.6 32 ............................A CTCGCAGGCCGAGTTCCACAGCGCGCCGATCG 2128 29 100.0 33 ............................. TCAAGGACGTGTTCAACTCCGTTGTGGACGCCA 2066 29 100.0 32 ............................. GCACGGGCTAGCGATCGTCCACTTTCATGCTT 2005 29 100.0 32 ............................. GTCACGTCGTTCATCGGCGGCATCGGCGACTG 1944 29 100.0 32 ............................. AAGGATACCGACATACGGATTCCCTTCGCCAT 1883 29 100.0 33 ............................. ACATGGGGTTCGGCCGTCTCGTTCGTCATACCA 1821 29 100.0 32 ............................. GCTTGGTTCTTGCGCATCGCCTCCTGTAGCTT 1760 29 100.0 32 ............................. AGCATCGCCAACCCGCTCAAGGATAGGCTCAA 1699 29 100.0 33 ............................. TAGAGCGCCTTGGATTACAGCGCGTCACGGCCG 1637 29 100.0 32 ............................. GAACGCACTATCAGCCAATACGTTCTTTTTGC 1576 29 100.0 32 ............................. GCCACGGGCATCTCGATCGAGCACGAGGGAGG 1515 29 100.0 33 ............................. TCTGGCCGACGGCGAGGTAGTCCGTGGCGCTCA 1453 29 100.0 32 ............................. GGCAAACTGATCATGTCCGGCTTCGCCAAAGG 1392 29 100.0 32 ............................. TCGCTTGTCGGTAAGATGGCCGCGCTTAATCG 1331 29 100.0 32 ............................. AGGCGTTGACACGCGCGTTCAACAGTTTTGAC 1270 29 100.0 32 ............................. GGAGGAGGAACAACAATGGCATTAAGCAACTC 1209 29 100.0 32 ............................. GGTGGTGTCGCCTACCAGCCGGGCGGACAGTA 1148 29 100.0 33 ............................. AATATCAAAGAACGCATATTCTTTATGAGCATG 1086 29 100.0 32 ............................. GCCCGAAATGCACGTCGAATTGGAATGATTGC 1025 29 100.0 33 ............................. GCTACAGACCGGCACAACGTCTCCCAATCACCA 963 29 100.0 32 ............................. AATATTGCATTGGCGAGCGGATTAGGCGTAAT 902 29 100.0 32 ............................. GTGACTTCACCATGACCTCCCCCACCGACTAC 841 29 100.0 32 ............................. ACGCCAGTCGTCTGCTCGAACACGTTGAGCGG 780 29 100.0 33 ............................. GTGTTGATGATCTCCGCGTTGTTGATGTTGAGA 718 29 100.0 32 ............................. ACGGAGGCGAGCGCTTCGACGTCCATGGCGGC 657 29 100.0 32 ............................. AGTCACCGTGTCCACGTCGATCTTGAACGCGG 596 29 100.0 32 ............................. AGTGGTGTCGGTCTGGTCGCCAAGGAGATATG 535 29 100.0 32 ............................. CCGGCCGACAAGATCAGCGGACGACCCGTGAC 474 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 413 29 100.0 32 ............................. GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 352 29 89.7 32 .......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 291 29 89.7 32 A......A......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG G [283] 229 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= =================================== ================== 71 29 99.3 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CGCTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGATATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : CTGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGACTGCGTTGCCGCTGTCTCGATTATGTTTGATATGGCTTGGTTTTTGTTCCGCATTTCACCTAACTCGATGGGAGATGATGGAATCATGTCCAAGGGCACGAGATACACGGATGAGTTCAAGGCGAAGGCCGTCAGGCTGTTGACGGAGTCCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //