Array 1 339059-338849 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVM01000001.1 Providencia rettgeri strain PrsM19 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 339058 28 100.0 32 ............................ AATTTTTATTGATAAATTGAAATCGGTATCAA 338998 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 338938 28 100.0 32 ............................ TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 338878 28 78.6 0 ......T...GT......A..AG..... | AT [338857] ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGATTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 349331-347742 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVM01000001.1 Providencia rettgeri strain PrsM19 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 349330 28 100.0 32 ............................ TGAAACAGATTCGGTAAGAATTTATTTACAAG 349270 28 100.0 32 ............................ GTATTTTCCCACGTTACATTGTACTCCCCCGC 349210 28 100.0 32 ............................ GTCCTTGGGAGGGCGTCACGTTCCATGCCCAG 349150 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGTGATAAT 349090 28 100.0 32 ............................ GTTAAACCTAAACTCGCCAGTCCCCGTATTTT 349030 28 100.0 32 ............................ ACCACCGTATTGGCTTGGGGCTCCTATTGAGC 348970 28 100.0 32 ............................ GTAAGGACAGGTAAGAGGGTACGTTCTGTCAT 348910 28 100.0 33 ............................ AATCACAAAGCTCATCATGGTGGGCTTTTTAAT 348849 28 100.0 32 ............................ AACAAAAATAGTTCTGGTTGCCGGAGGTAACA 348789 28 100.0 32 ............................ GTATCTCTGGAGCAGCCATTGATGCTAAACAA 348729 28 100.0 32 ............................ TACACCTCAATATCTATCTTTGACCGTATCTC 348669 28 100.0 32 ............................ ATATGGGGAAGAAACTACCAAGGAGACGATTC 348609 28 100.0 32 ............................ TTGTAGATATTCGGCATATATTCATTACTTAG 348549 28 100.0 32 ............................ ACTGAAATTATCAACTGTAATGTTATATGGAT 348489 28 100.0 32 ............................ TGTAATTTTCGTTGCTGTTGAATAATACACGT 348429 28 100.0 32 ............................ GTTCCAATTATCAACAAAACCACCTGCTTGAT 348369 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 348309 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 348249 28 100.0 32 ............................ ATATAGACATTACAGATTTCAAGACAGTTGTT 348189 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 348129 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 348069 28 100.0 32 ............................ ATATAGACATTACAGATTTCAAGACAGTTGTT 348009 28 100.0 32 ............................ AACTTCAAATCATGCCAGCCGTTTGTATTCCA 347949 28 100.0 32 ............................ TCGAAAGGGTTTAGTATCACACTGGGCAAGCC 347889 28 100.0 32 ............................ TAGTTCTGCACGAAGTTGTTCAGTACGTTCGG 347829 28 100.0 32 ............................ AACCTGAACTCTAATATATGCAGAATATTGCC 347769 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCGATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACAAATTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTCAAAGACTTAAATAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //