Array 1 338-2707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUF010000021.1 Pseudomonas aeruginosa strain PASP415 NODE_21_length_93573_cov_38.5067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 338 28 100.0 32 ............................ TGCCGCTGGCTCGAGGCGGCCTTGGGGCGAAC 398 28 100.0 32 ............................ AACCACTGCACAGGCACACCCCATGGCCGCTG 458 28 100.0 32 ............................ CTGAACGCGATTCGGGAAATCGACATTGAACA 518 28 100.0 32 ............................ AGATTCGAAGCTATCAGGCCTACCGTCACCAA 578 28 100.0 32 ............................ TGGACGCCGACAGCCGCTACGCCAAGATGGTC 638 28 100.0 32 ............................ TTCATGGGGATGAGTCCCGCGCAGCGGGAGAT 698 28 100.0 32 ............................ ATGGAGGCCACTAATTCGCGGTACATGATCCG 758 28 100.0 32 ............................ ATCAGCATGTCGAGGCCATAGCGCATCTTGTG 818 28 100.0 32 ............................ CAGTTCTGGCGGCGGACCTTCTCCCTTGATGT 878 28 100.0 32 ............................ AGATGGAAATACCTCGCTCGTCATTCCAGGTG 938 28 100.0 32 ............................ TCGTCGTTCCACCGCTCGCCGTTAAGCCAAGT 998 28 100.0 32 ............................ AATTCGGCGCTGAGCTGATTCGTCACCTGGCT 1058 28 100.0 32 ............................ TGAAGAACGTGGATCGTCAGTACGACGACCAG 1118 28 100.0 32 ............................ AAGGTCGTCCGTTCGGCAATTCGCGTGCTCCG 1178 28 100.0 32 ............................ TGCAAGCCTCGGTCAAAGACACTGAGGTACTA 1238 28 100.0 32 ............................ TATGTCCGTCAAGTGTTTGGCGGGGACTATCG 1298 28 100.0 32 ............................ TATAGGAGAGATCAGCGCTCGGAGGCATCTCT 1358 28 100.0 32 ............................ ATCCAGCACGAACACCATCTGTGTAGGTTTCC 1418 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 1478 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 1538 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 1598 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 1658 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 1718 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 1778 28 100.0 32 ............................ ATGCAGAGGCGGTCGATGCGCGGCAGCTTCAC 1838 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 1898 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 1958 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 2018 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 2078 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 2138 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 2198 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 2258 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 2318 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 2378 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 2438 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 2499 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 2559 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 2620 28 96.4 32 ........................A... TATCACCCAAGCCCGCGACGTCGACGCGGAAC 2680 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37617-38365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUF010000028.1 Pseudomonas aeruginosa strain PASP415 NODE_28_length_48444_cov_35.7483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37617 28 100.0 32 ............................ ATCGGCGCCAGCATGGACGAGCGTATCCAGGG 37677 28 100.0 32 ............................ GCTGGCGCCCTGGTCTGCGTCGTTTGCGATCT 37737 28 100.0 32 ............................ ACTTCGTGCGTGAACTCCAGTCGAGGGGATAC 37797 28 100.0 32 ............................ AAGGACACCAACCTGGTGCCGGCAAACTTCGT 37857 28 100.0 32 ............................ TCATTCCAGACCATGGCCGCTCACTACTGAGC 37917 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 37977 28 100.0 33 ............................ GTCCTCGATCAGCTTCGCGGCGCGGGCGGTGTA 38038 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 38098 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 38158 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 38218 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38278 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38338 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48108-47239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUF010000028.1 Pseudomonas aeruginosa strain PASP415 NODE_28_length_48444_cov_35.7483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48107 28 100.0 32 ............................ TGAGGATTTTCTTCGGACATAGGGAATACCTC 48047 28 100.0 32 ............................ AGCTGAAGGTCGCCACCCCCGGTAACCCCGAC 47987 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 47927 28 100.0 32 ............................ TTGACGCCCAGGGCGCCGACAAGGACCGTCGC 47867 28 100.0 32 ............................ TCCTCCAGAGGATTGCATCAAGGGGCTGACGG 47807 28 100.0 32 ............................ ATCTACCCGCAAAGCAAAGCCCCGCGGACCGA 47747 28 100.0 32 ............................ AACGCGTCCAACGTGCTAGCCAAGGCCACCCG 47687 28 100.0 32 ............................ AGTGATGGAAAACAGCGCCGTGACCCAACCTG 47627 28 100.0 32 ............................ AATCCCGACTTGGCGTCGTTGATAGCCACCTC 47567 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 47507 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 47447 28 100.0 32 ............................ AGGGGGGGGTCGGCAGGCAGACTCACCAGCAG 47387 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 47326 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 47266 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGCCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //