Array 1 959513-960806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016786.1 Clostridium isatidis strain DSM 15098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 959513 37 100.0 38 ..................................... GATACAGTAACTTGTTATATTCCTCATTTGGATATAGA 959588 37 100.0 37 ..................................... TAAAATAAAGAAGGTTAATAGGGATAAAATACTTCAG 959662 37 100.0 36 ..................................... TAATTTTAGTTCGCAATATAAATCGAATCCGTATTA 959735 37 100.0 37 ..................................... AAGCTTCGGATATTGTGTTATCTAATTTTCTTTTTAT 959809 37 100.0 38 ..................................... AAAAATGAATTATTGACATACCTAGGTATTAACAATAA 959884 37 100.0 37 ..................................... TTAATAGAAACAGCATTTATATAGTTACCTTCATCGA 959958 37 100.0 36 ..................................... TTTAATGGAATAATTTACCGCTATTCGCATTAATGA 960031 37 100.0 38 ..................................... CTTTATAGTACTCTCATAATCTATTATAGGACAAAAAC 960106 37 100.0 36 ..................................... AAGACATTGGCTTTTTTACAAGATAAGATTTTGTTG 960179 37 100.0 37 ..................................... ATGTTTTTATTGAGCTCATTTTCAATAGCAATAGCTT 960253 37 100.0 36 ..................................... ATTTCTTTTCAAGTTGATTAGCATCAGCACCATTGA 960326 37 100.0 38 ..................................... AAGGAAAACATTTCTCAAAAAGGGTTTGGGATAATGAA 960401 37 100.0 38 ..................................... AAATAGGTGGAGATGTAGGTGAATGGAATGATAACGAT 960476 37 100.0 36 ..................................... TTAATCAATTTTTCTATTTCTTGCAATCTATCTATT 960549 37 100.0 36 ..................................... GTTGTTTTATGTGTTCTGATGCTTGCTCTGCAGTTA 960622 37 100.0 36 ..................................... ATTGTAAGTTGTGGGACGTGATAGGTTTGGGGAATA 960695 37 94.6 38 ........................C...........A TGCTGGTATCAGTACTAAATCAAGAACTTCTTATTTCT 960770 36 81.1 0 ......A...-.G...........C...T...T...G | A [960778] ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 98.6 37 ATTTAAGTGTAACTTCCATTAAAATAAGGATTGAAAC # Left flank : ATGTTGGGGGTATAAAATATGTGGTCTGAAAAAAGAGATCTGGAAGGTGATATGATTTTTGCTATATTTCCTATAGTGTTAAATATTGGTATAAACTTTCTATATTACATTAAGGGAGCTTCCTATGAAAGCATAGAGGCTGTAAATAATATTAATTCTTCTAGTATTTTTATTATTTTTATATGCTGCCTTTTAAATTTCTTTGGAAAGAGAAAAAAGCTTTCAAAAGAAGAGAAAAAAGAGCTTATTCATGGGGGACTTTCTAAGAAGGTTATAAAAACAAGAATGGCAAATGCTTAATTATATGAAATTTTTAAAGGAAGACAGGCTGTGCTTTTAAAAAGCCTTGAAAATACATGCTTTAGAAGCTATAATGAATATGTAAGGTGGACAGAAAAAGGCCTATTTTAGCTTGTACAAATAAGTGAAAATATTAATTTTAAGCTCGTCCACAAAAGCCCTTAAAGCTAGAAAATATCAGCATTTGCGAAAAATTTGCT # Right flank : GACAAACTAAAAATACACCTCTAATAATTCTTTTTATTAAAAGCAGAGTTTTTTAAAAAATAATTATTAGGCCTATAGAGCTTTCGAATCTACTTGAAGATATTTTGATTCCTGAAATAGTAGAGTCCATAATAGAAAGTATAAAATCAGTAATTAGTTCCATTTATAAAAAATCTCTTTTGTTTATATAAAACTTATCTTCTTTAATCTATTGATTAAATATTGTATAAATTTTGATAATTTGTATGGTAGATTAAATAATTATAGGCAGATTTAAGTAATTGTTGTGTGGATAGATGATCATATTTCATGAGCGGATATTTTACTTAAATAAATTCTTCAAGGCCTAAATTGTATAAATACGGGTAGATAGTCCTATAATTTACATTAAGCATTGTGTTAAAGATAAAGCAGAGTATTGGAATTTAGATAAGATTATATCTAATGTCAGATAAGAGGGCTAGGTGGATAGCAGCAATTGTCCTTAGGTAGAAATCCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGTGTAACTTCCATTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 963902-964085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016786.1 Clostridium isatidis strain DSM 15098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 963902 37 100.0 36 ..................................... CACGCTCTTGACCTTAAATCAAACATTAAGTCAAGG 963975 37 100.0 37 ..................................... TTACCAACAAATAATAAAGCATTTCCCCTACGTTTAG 964049 37 86.5 0 G.............................A.AG..G | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 95.5 37 ATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAAC # Left flank : AATAGCCCCCAATATTCCTGCTAAGCGATACCCAACAAGTATAGAGGCATTTACAGCCATTGCACCTGGAGATGCTTGAGCTATTGCTGTTAAGTCCAACATTTCTTCTTCTTCAATCCATTTATACTCTTTAACAAACTTCTTTCTCATTAGGGGAACAATAACGTAACCCCCACCAAAAGTGAAGGCACTTAAAAAGAAAGTTGATTTAAATAATTTAAAATAAAAATTAAACTTTTCCTTCAAAATTTTCACCTCGATAGCTTTATTATAATAGTTATCAAACTATAAGTAAAATTTTTAGTTCATAATTTTTAAAGTAAGACAAGCTCTAACTTCTGAAAGACTTGAAAATACTAGTTTTAGAAACTATAATAAATATGTAAAGTGGACAGAAAAAGGCTCATTTTAGCTTGTCCTAGTGAGTAAAAATATTAATTCTAAGCTAGTCCGCAAAAGCCAATAAATCTAGAAAAAATAAGGGTTTGCGAAAAATTTGC # Right flank : GAGGAATAATATTGATAATCAAAAAACAGTAAAAAAGATAAGATAAAAAATAATGATTACTATAGAAGGTATGTAATTAAATATAAAAAATTAAATTATATATAATTTTTTAAGTAAGACAAGCTTTAACTTTTGGAAGTTTTGAAAATACTAGTTTTAGAAGCTATAATGAATATGTAAAGGGGACAGAAAAAGATCATTTTTAGCTTGTACAAGTAAGTAAAAATATGAATTTTAAACTAGTCCACAAATATCAATAAAGCTTGAAAAAATCAGGGCTGGTGGAATTTAAGGTTAGTTCCATTAAAACAAGGATTGAAACTAACATTCTCTTATTGTAATAAAGTCTTTACATATAGTTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAACATAGGATAATTCAATTAGCAAAGCAAGGTAAGGATATATTTAAGTGTTAGTTCCATTAAAACAAGGATTTATTTTAGTTATGAGAATTTAGGCATTAAAAATTTA # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 964378-964553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016786.1 Clostridium isatidis strain DSM 15098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 964378 29 100.0 44 ............................. TAACATTCTCTTATTGTAATAAAGTCTTTACATATAGTTTAAGT 964451 29 100.0 45 ............................. ATAGGATAATTCAATTAGCAAAGCAAGGTAAGGATATATTTAAGT 964525 29 86.2 0 ........................T.TTT | ========== ====== ====== ====== ============================= ============================================= ================== 3 29 95.4 45 GTTAGTTCCATTAAAACAAGGATTGAAAC # Left flank : AATAAGGGTTTGCGAAAAATTTGCATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAACCACGCTCTTGACCTTAAATCAAACATTAAGTCAAGGATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAACTTACCAACAAATAATAAAGCATTTCCCCTACGTTTAGGTTTAAGTGTTAGTTCCATTAAAACAAGGAATAGAAGAGGAATAATATTGATAATCAAAAAACAGTAAAAAAGATAAGATAAAAAATAATGATTACTATAGAAGGTATGTAATTAAATATAAAAAATTAAATTATATATAATTTTTTAAGTAAGACAAGCTTTAACTTTTGGAAGTTTTGAAAATACTAGTTTTAGAAGCTATAATGAATATGTAAAGGGGACAGAAAAAGATCATTTTTAGCTTGTACAAGTAAGTAAAAATATGAATTTTAAACTAGTCCACAAATATCAATAAAGCTTGAAAAAATCAGGGCTGGTGGAATTTAAG # Right flank : TTAGTTATGAGAATTTAGGCATTAAAAATTTATGAAAAAATATTTTAACAAGAATGATTTTAAAAATTCAATTATTTAATTCAAGTGATAAGAAGCATTGTAATATTTCTTATCATTTTTTTATTAAGAAAAATATATGGATTAGTTATTTTGAATAATTAAGTAAAAAATTTAAAATTATGTTTATAATTAACAAACATTGTCTAGAATTTTAATATTAAGATTTATAAATGTTTATATTTGGGAGAGTGATGCAAATGGAGTTGGTTATTAATACTAATGGAGCATACTTAAGAAAAGTGGATGAAAGATTTCAAGTTACAGTTGGTGGAGTTAGGCAGGAATTTTCTTGTAAGAAAATAGACAAAATTTTAATTACAACTGCTGCTTTAGTAACAACTGATGCTTTAAAACTGGCTATAGAAAATAATATAGATGTAGTATTTCTTGAATATAATGGCCAACCATTTGGAAGAGTATGGCATTCAAAACTAGGAAGT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 4 975814-976438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016786.1 Clostridium isatidis strain DSM 15098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 975814 37 100.0 35 ..................................... AAAAAACTTTTATTTGATTTTCAAATTGCTTTTCT 975886 37 100.0 37 ..................................... ACGAGCTAAGCCCGGCAACTAAAGAAAATATTATAAA 975960 37 100.0 36 ..................................... GAATGAGAAAAATATTTTCTATAAAAACCATATTCA 976033 37 100.0 37 ..................................... ATATTCCAGCTTCATCTCTATTAAATGCTCTGTACTG 976107 37 100.0 37 ..................................... TAAATAAATTTACCTAGAGCTTTACCTTTCTTAACTT 976181 37 100.0 35 ..................................... ATGTAAGGACTTGCTTCAATAATTTGTGTCATTGC 976253 37 100.0 37 ..................................... AGTACATCTATAATGGGTTGCATGCTCTGTGATATAG 976327 37 89.2 38 G.....A.................T...A........ CTAAGTTTGATAAAGTTTTGGAGTATTAATGCAACTTT 976402 37 81.1 0 ........T.C.C...............CC.....GA | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 37 ATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAAC # Left flank : ATTATGCTAAAAAAATTATAAGCTTATTTAAATTTATTAAGTCTAGGTTTGTCTTACAATTTATCTAAATCCTAATTGATATAGTTTTTTTCTATTTTATATTACTCCTGTTAAATAAAAATAATTATTCAGTCAAGATAATTTGATAATTAATAACCTGATAGGGGCCAATAGATACATAAAAAGAACTGAAATTAGAGTATTTATCTTGTATTTATAAAAATGAACTGAAAATAGTATTTTATATTAAATAAATTTACTAGATCTAATAATATAAATTTTTTATAAACAAAAGTTTAATTATATATAATTTTTGAAATAAGACAAGCTTCAACTTTAGAAAGGCTTGAAAATACTAGCTTTAGAGACTATAATAAATATGTAAAGTGGACAGAAAAAGATCAGTTTTGGCTTGTACAGATAAGTAAAAATATGAAATCTAAGCTCGTCCACAAAAGCCAACAAAGCTAGAAAAAATCAGTGTTTGCGAAAAATTTCCT # Right flank : AAACTACTGAATATAATATATTTATTAAAGAACTTTTAGATTTTACATAAATTAATTAATTAAGGATGTTGTAAAATTTTTTCTGAAAAATAACTAAAAGTAAATGGATATTTCCTTGGAAATATTTGTAAGAAATTATAGGTAAATTTATCCTAACAATTATTTTGAAAAATACTTTATAATAAACTTAGTATGTATTATTCAAAATCTTAACTTTATGGAAGTGAAAAGAAATGAGAGAAAATAATTCTAAGTTACCTAGAAATAATAAAATTATATTTATGCTTTTTATTTTACTTATGATTTTACTTATGATTTTATCGTAGTTATCATGGGAACTTTCTATGGAAAAAAGCTACAAAAGGAAAATTTACTAACTCAAAAATTAGAAGAGCTTACTAATGATTTTAACAATATAAATATTATGAATATGAATGAAGATGAAGAAAAATCTTATAATGAGCTTAAAAGCAAATTTGAAAACTCAATAAATGAAAAAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGTGTTAGTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //