Array 1 10171-13038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBUN010000055.1 Lactobacillus helveticus CIRM-BIA 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10171 30 100.0 36 .............................. AATTTTTAACTTACGTGGGTTCGGCCCTCCAGCGCG 10237 30 100.0 36 .............................. TCAACACCGCCATGTTTCATACATTTATGAACAAAA 10303 30 100.0 35 .............................. TCGTGTAGCTTAATCCAAGATCAGCTTTGCCAGCT 10368 30 100.0 36 .............................. GAAGTGATTCCAACCAGAACCAATCTGTTTGAACAT 10434 30 100.0 36 .............................. ATTAATAGAAGAATGATACTTCTTTACCAAATCCTT 10500 30 100.0 37 .............................. ATATTGGCGGTCTTTTTAAGGCAAAAAATTAATTTGA 10567 30 100.0 35 .............................. ACAGTTATGGTGGCTATTATGTCTATTGTGTCTAT 10632 30 100.0 37 .............................. TAGCTATGGTATAGTATATATAGTTAAAAAAGAAGAA 10699 30 100.0 36 .............................. TGACGTAGGAACTAGGTATGTTAGCTGTAAAAGCAA 10765 30 100.0 35 .............................. ATCTACAATAGTAGCTGGGATAACAAGACGTATAG 10830 30 100.0 37 .............................. AATGTATACCAGTCTATTGGTGGCATTGCTCGTACAG 10897 30 100.0 35 .............................. TTAATTGCAAGATTTACTCTTGTGCGACTTTCACC 10962 30 100.0 36 .............................. AAATATTGGTGTTCCAATTCTGGGACTGGCTTAATT 11028 30 100.0 35 .............................. GGCTAAAAGCTCGAAAGAAGTCGAAGGACTAACCA 11093 30 100.0 39 .............................. TTGCATAAAATGCGTCTCTTAATCTTGTCTTTGATTCAG 11162 30 100.0 36 .............................. TATTTTTGTATGGAAAAAGTAAGCGATTTAAATAGC 11228 30 100.0 36 .............................. GCATAAATAGTAAATTCTTTCATTTTTTGTACCTCG 11294 30 100.0 35 .............................. TCAACAAGCTTGATGGAGTTTAAATCCCGACCACC 11359 30 100.0 36 .............................. AAGCAAAATTGCAAAGTATGGTTACCAAAATCTTTA 11425 30 100.0 36 .............................. ACAACTAACGCTGCAAACAACGCACTAAGAAAACAA 11491 30 100.0 36 .............................. GTGCAAAATAAAAATATGCCTAAACGTTATATCAAA 11557 30 100.0 36 .............................. CTATCAAAGGCTTTACTCATGTTGGCTCTGGTCTGC 11623 30 100.0 37 .............................. CCAATCAAATCATCATTAAGGAAATCTGCTGCAAACG 11690 30 100.0 35 .............................. ATTTAGGACTGTCGTTGATCATCATCGTTAGTCTG 11755 30 100.0 35 .............................. CATTAATAGCCGTTGTCGTCTTACTTCTAAAGTGT 11820 30 100.0 36 .............................. TTCTCTGGCTCGGTAGGCTGTGTTTGTGCCGTAGTT 11886 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 11952 30 100.0 36 .............................. TGTAAGTGCTTGGTATTAATACCAGCAATGACGTAA 12018 29 96.7 37 ......................-....... TCATGGCTTAAAATCCTAATAGTACGAGTATTGTTAA 12084 30 100.0 36 .............................. CTATTCCGACTTGACCCAGATGAACTCACTAACCAC 12150 30 100.0 36 .............................. CAAAAATGGAACGGGTGGGAACGGTTTAATGAAATT 12216 30 100.0 36 .............................. TGAAATACTCTGAATCATGTTTAGCTTGATCGCCTG 12282 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 12349 30 100.0 36 .............................. GTATTCCTGTGGTACTGATTTGGTAGTTCAGCCTAT 12415 30 100.0 36 .............................. GATTATGCGTACGGCAATAACTCATGGCTACAAGTC 12481 30 100.0 36 .............................. TATGGCGAAAAATTAGAAGAAAATTTTGTCAAAATT 12547 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 12612 30 100.0 36 .............................. AGATTTGTGGGCGCTTTAATATTGAAAATGCAGAAG 12678 30 100.0 36 .............................. AATTCACGATTATATACTTCATCAGGTGCAAGACTA 12744 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 12809 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 12875 30 90.0 38 ............T.............G..T TTCTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 12943 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 13009 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ======================================= ================== 44 30 98.8 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 770-919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBUN010000199.1 Lactobacillus helveticus CIRM-BIA 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 770 29 100.0 32 ............................. GGCCGTGCCGGTATTTTAACCTGCTTGACAAG 831 29 96.6 32 ............................T ATCACCAACTGGCCAGTTGATAACGGCGCTCC 892 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 33 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATTTTTTATTAAAGAGGACTATGTCCTCCTTTTTTAATGCAATAAAAAACCTGTTAACAGCTTATCATATAGATAAGTCATCAACAGGAAAAATTATAGAGCCAAAAAAGTTCTCTCTTTTTTAGTACCTATTATTGATTTTTGTTGTCACCATTATCATCAAAATCAAAGCTTTGTTCAGATTCAGAATTATCATCTGTATTATTATCAGCATTTAACTCATCAGCAATTTCAGCTGTATCGAGCAGTGAATTTAACGAGGTAGGTTTGCTATCTGAACATGGCTCCAACTCATTGTTTGGACTAATCAAGTTAGAGATTTTTTCTGGCAATAGATCAACTTTAGCATCAATTTGTTTTATCAAATCAATAAGCTGGTCATGATTATCAACTTGCAGACGCAGGTCTTGTACTTCTTTAGTAAGCGAAGTAATCAATTGCTTATCTGACTGTTTCTTAGCCTTCTCCAACTTAAAACGCTCAACAATTGCACGTTTAG # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTCGTAAATTGCAATAATAAATTGAACGCTTAAGCTGCTTGATAGATTTGATCTAATTCTCTCTCAAAGATTTAATCTGGCGTGTGATATGCCAGGATCTTTCTGGGCAAAGAGTTGCACCAGGTTTCAATATCAATGATTTGTTGGAGAGAATAGTTATTGATGCAGTCTCCTTTAGGAATGAATCTGCGGATCAGGCCATTATATATTTCAACAGTTCCTTTATCACAAGTATCACAAGAAGTATAAGGATGAGCATAATAAATAAGCGTTTTAGAGACTTGTTCCAGATTAGCTAGATCCGCAAACTCTGAACCATTATTAGTAGTAATTGTCTTAAAGATATCGTTCCAATGCTCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //