Array 1 57323-61804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZH01000004.1 Bifidobacterium pseudolongum subsp. pseudolongum strain LMG 11571 Contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57323 29 96.6 32 ............................A AGTGTCACACTTATATGCAGTGGGAGTAGTGG 57384 29 100.0 32 ............................. GCTCAGCGTGAAAAAATCGCTACCGTTATGGG 57445 29 100.0 32 ............................. TTCGCAGACATGTGGGATAATGCTGACGGCAT 57506 29 100.0 32 ............................. ATATTTTGCACGGTCAGTTTCTGTGTCTCGCT 57567 29 96.6 32 ............................T TATGCAAGTCACTGTCACCGCAAAAACACGTA 57628 29 100.0 32 ............................. AAGTGGCCCTTGCCGGGGATCTCGAGGAAGCG 57689 29 100.0 32 ............................. GCGCTGTTCACGCGCGACGTGACCGGCGACGC 57750 29 100.0 32 ............................. GGGCCGTCAACACTCCCAGCACCCTACCCCCG 57811 29 100.0 32 ............................. GCGAAACGTGACATCGTAGTGACAGGAAGCAA 57872 29 100.0 32 ............................. GAGGCCGCCGCGAGCACGGCGACGATGGAGGG 57933 29 100.0 32 ............................. TCGGTTGGAACCTCCTCAAGGACGCGTTCGGC 57994 29 100.0 32 ............................. CAGGGAAGTGATGATGGCAGAGCGAACCACAA 58055 29 100.0 32 ............................. GACACGAACATGACCACATACCAGAACGGGCC 58116 29 100.0 32 ............................. TGCAGGCGGGCAATGAAAAAACAAACGTGTTC 58177 29 100.0 32 ............................. GCGCTCTAATTCCAATAATGCGTTATTGAATG 58238 29 100.0 32 ............................. ACGACCAAGCCAGCAGCATGTGCGACGACACG 58299 29 100.0 32 ............................. GCCGACGAGATCCTCGGAGCAGCCAAGGAAGA 58360 29 100.0 32 ............................. CGCGGACACGTTGCGCGTAAAGGCACGCGCCA 58421 29 100.0 32 ............................. TTGTTCCTTGTTGGATATTTTTAGTATAGCAG 58482 29 100.0 32 ............................. CCTAAGCGTAAAGCGGTCAATAATAATAACAA 58543 29 100.0 32 ............................. GCCGTCGAACACGGTATGCCCGTAGTCAATAT 58604 29 100.0 32 ............................. GCGCAGGATGCGGCCGCGTGGCTCAAGGACCT 58665 29 100.0 32 ............................. ATCCTCTACTCGGCGCGCACTGTCACCATTGA 58726 29 100.0 32 ............................. GCATTGAAATTAGCAAATGGACCAGCAACTGT 58787 29 100.0 32 ............................. TCCTCGATGGTGGGCGCCATCAGACCCAAGGC 58848 29 100.0 32 ............................. GATCTCGTCGGCCTTCGCGTCGAGTTCCTCTT 58909 29 100.0 32 ............................. TCCTCGAAGTCCACGCCGGCGCCACGGGCGGC 58970 29 96.6 32 ............................A ATCTCATGTGTATGAGCAATTTTACGTACTGG 59031 29 96.6 32 .......................A..... ATGCATGAGGTGGTCACTGGGTGTGTGTGGCT 59092 29 100.0 32 ............................. AATCCCGGAAGTTTTCGTTGATCGTTGTTTTC 59153 29 100.0 32 ............................. GATTGTTGCCATGTCTGAACCACCCAAGCCTT 59214 29 100.0 32 ............................. CATTATCGCCTGTTGTATGAAATGCGCGGCCC 59275 29 100.0 32 ............................. CCTACCTAGCTTGCGAACCTTTAGAGACCCAA 59336 29 100.0 32 ............................. TGCAGTATCCACTCATTGCCCTTGTGGTGGCG 59397 29 100.0 32 ............................. CCGTAACGCCTCATAAGAGAGTCGATACGCTG 59458 29 100.0 32 ............................. GCACGCGCGTCGCAATCAGCGGGCAGGACGGT 59519 29 100.0 32 ............................. TCCTTGTACTGCTCCGGTTCGAGGTCCGGCTT 59580 29 100.0 32 ............................. CACGATAAACGCGCGCAGGGAATCCTCACCAT 59641 29 100.0 32 ............................. GCGAGCGACCCGCGAAAAAACGACGCTGTGGG 59702 29 100.0 32 ............................. TTTCGCGTCATGGGCGTTCCCGCCCACTGTTT 59763 29 100.0 32 ............................. TGGCCGGGGGCGCATGAACCCTACTCCCGCAA 59824 29 100.0 32 ............................. CAGAACAACGAGTGGGTGCTGAACATCAAGGG 59885 29 100.0 32 ............................. CGGGCCACCAACAGGTGAACCCGCTCCACAAC 59946 29 100.0 32 ............................. TCCACCCAATTCCACCCGTCCTGGAACGCTTG 60007 29 100.0 32 ............................. GGACGCCACCCTCCAACTCGCCGCCCCAACGG 60068 29 100.0 32 ............................. GCGACGGTGGCTTCGACATTCCATCCGGAGCC 60129 29 100.0 32 ............................. CTTACGAGTGCCATGATTCCGTCTCCTTGCTA 60190 29 100.0 32 ............................. CTTACGAGTGCCATGATTCCGTCTCCTTGCTA 60251 29 96.6 32 ............................T GCGGACATGCGGATTATAGACACGGCGCTGGG 60312 29 96.6 32 ............................T GCGGACATGCGGATTATAGACACGGCGCTGGG 60373 29 100.0 32 ............................. GCCAGTGGCGTCCGCGAGGGGCGCGCCCACGG 60434 29 96.6 32 ............................T GCGGCGTTGCTCAAAACACATGCGCAGGCGGT 60495 29 100.0 32 ............................. CCACCCGAAACCTACTGGATGGGCGAACCGAA 60556 29 100.0 32 ............................. CGGCACGTCCTCACCCGCGGCTTCATTCGCTC 60617 29 100.0 32 ............................. CGGAGATCTGGATGCGGGAAGCACAGGACATC 60678 29 100.0 32 ............................. TCTGATGCAGACGATCCCGCCGACGTTCGCCG 60739 29 100.0 32 ............................. GACTTGAAACCTCCACCGGTGTCGTTGAGCCC 60800 29 100.0 32 ............................. CGTTGAGCAAGGTCGAGAAGCTCGAGGGCAGT 60861 29 100.0 32 ............................. CGTTGAGCAAGGTCGAGAAGCTCGAGGGCAGT 60922 29 100.0 32 ............................. TTGAGGCAGTTGCGGGTATTCCACCGGCACGT 60983 29 100.0 32 ............................. TGTCTGGCCGGTTCGTAAAAGTGGTCATATTG 61044 29 100.0 32 ............................. CGCAAGCGCACATCAGCCAATGGCATGAGCAC 61105 29 100.0 32 ............................. CGCAGTGAGATTTACGCCGAACTCCACGGCGT 61166 29 100.0 32 ............................. AAGCGGTATCCCTTGCGGGATTTCTCCTCTGT 61227 29 100.0 32 ............................. TCGCATAGTCGGTTGTACAGGTAGGACACGTA 61288 29 100.0 32 ............................. GATTGATCGTCCACGTCACAGCAGGATTCATC 61349 29 100.0 32 ............................. CTGAACGGGTGGATCATCGTTGATGACGCCAA 61410 29 100.0 32 ............................. TTCACCAGTGGAGGTCTCGTCGCCTACAACGC 61471 29 100.0 32 ............................. ACAAGGGCGTTGGCGATTTGGGTTTGTCGGGT 61532 29 96.6 32 .....T....................... CGCACCGGCATTCCGAACTTGCTCATGGTGCA 61593 29 100.0 32 ............................. CCCTTCGCGGACGTGATTCGTGTCGATGCCGA 61654 29 100.0 32 ............................. AGCGACGCATACGCGCGCGCCCAGCTCGAGCA 61715 29 100.0 32 ............................. GACGTACTGACGAAAATCAGCAACGTCATAGG 61776 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 74 29 99.6 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCTGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTGTATTCGGAGAATAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAGATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : GGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCCAAAAGCGGACAGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGCACGCGCTCGAAACACTCGGTTTGCCCCGCATGTGCGGGGATGATCCGGCTCCAATAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62265-64550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZH01000004.1 Bifidobacterium pseudolongum subsp. pseudolongum strain LMG 11571 Contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62265 29 100.0 32 ............................. GCTCCAATATAATGGCTCCATTGTCCCACCTT 62326 29 100.0 32 ............................. TGGAGCGGCCTGCCGAACGGCATCGATGCACG 62387 29 100.0 32 ............................. GAGCCCAACCATGCGTAACATCAAGCATCTAC 62448 29 100.0 32 ............................. TATAATGCCGCACACTGGGTAATCCCGTGGAA 62509 29 100.0 32 ............................. CGCTACATGGATTTGGGCAAGACCATAATCCA 62570 29 100.0 32 ............................. TCCACTGCACCGTCAGCCGCGAAACCGATGAC 62631 29 100.0 32 ............................. CCGCCGCCACCGACATTCACCTGCGACGGCAA 62692 29 100.0 32 ............................. GCGTAGGCAACGTAAGTACAATGCGGCGAAAA 62753 29 100.0 32 ............................. AGGCTATCGAATTCACGAACGGCAGCCGCATC 62814 29 100.0 32 ............................. TGCGGTCGCGAGGAACACCGGCTCGACGGCGT 62875 29 100.0 32 ............................. GAGCAGTGAATGGTCGTCATACGAGAGGACAT 62936 29 100.0 32 ............................. CCCATACCCTGGTAACCACAGCAGGACACGGC 62997 29 96.6 32 ............................C CGCGCAATGGGCCAGTGGCATATGGAACCCGC 63058 29 100.0 32 ............................. AAGTAGCCAAACTTGGCGGAAACATGCAGGTG 63119 29 100.0 32 ............................. AACGCGCATGGCATGGAACGAGACGGTGGAGT 63180 29 100.0 32 ............................. AAATCTTTATGATGCAAGTCGCCACGCAGAAC 63241 29 100.0 32 ............................. CAAGCGACCCGCGAAAAAACGACGCTGTGGGA 63302 29 100.0 32 ............................. ACCGGCAAGACCGCGCAGGCGCGCGCCACCGC 63363 29 100.0 32 ............................. GCATTGTACAGCTTGGCTTTTCCCGCCGCCGT 63424 29 100.0 32 ............................. CGCAGCAGACATTGTGGGAATCAGACTGCAAG 63485 29 100.0 32 ............................. ACGGCTGACCCCGACGGGTGGTCGCGGTTCGC 63546 29 96.6 32 ..........T.................. CGGCATGGCGAACGTGCTACGATACACCCTCA 63607 29 96.6 32 ............................A TATGCGACGAACGCGAGCCAGACCGATAGCGA 63668 29 100.0 32 ............................. AAAACCATCACCCCCAAGCAGGCGCTCGCCGA 63729 29 96.6 32 ............................A GCGCGCCGCCCGATTTTGGTCAGACTGGCGAG 63790 29 100.0 32 ............................. GATCCACCGGCACACAGGCGCACAGCGTGCAC 63851 29 100.0 32 ............................. TTGCCGCAGGCGGTCGCTTGGCACATGCCGCA 63912 29 96.6 32 ..........T.................. GTGGAATGCTTCATCAATTCCGCGAACGGATA 63973 29 96.6 32 ........T.................... TTTGCGGGCGCGCTGCACATACTTCTCGATGC 64034 29 100.0 32 ............................. TATGGGGAGGAAAATATCATTCCTGAAAACGT 64095 29 100.0 32 ............................. GTGAGGGTCATTGACGCCGACCATGATCTGAC 64156 29 100.0 32 ............................. TCGAGGCTGCGGCAGAAGGTGAAACGCTGCCG 64217 29 100.0 32 ............................. ATTCCACTTCACCTGCCGGCGGATGACATTCA 64278 29 96.6 32 ............................T TCGAGAATCCTACGCCGATCGGCATCGTCCAT 64339 29 100.0 32 ............................. ATGCCAATATGATTCAACCGTCGGTGAGCGGC 64400 29 100.0 32 ............................. GACGCCGAGGACCACTTCAAGGCGTATACGGA 64461 29 96.6 32 ............................A TTCACGCGCGTAGCGAGCTGCGTAAGCGCGGA 64522 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.3 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : AACGTCATAGGGTTTGCCCCGCATGTGCGGGGATGATCCGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCCAAAAGCGGACAGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGCACGCGCTCGAAACACTCG # Right flank : GTAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAAAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTCGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCAGCAGTTTCTGTTTTTGCTACGGGTAGTGTTCTTTCTGCTACGGGTAGTGCTTTTCTGGCGCACTCGTCACTATGATCCGCCATATTTCAACGATTGTAGGTGGAGGCTACGCGAGGAACCACTACCCGTAGCGGGAGGAGCACTACCCGTAGTGAAGAAGGCACTACCCGTAGCGGTGGTAGTGCCACGGCCATGTCGAATTCGCCGTTTATGTCACCCGCATGGCTGTTGGTGTCTATGGTCAGACATCAGCAGCCATATGGGACGCGATTATTGGACTCCCGTGACTGACCTCAGCCATCAACTACCATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //