Array 1 80002-77138 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKJ01000019.1 Porphyromonas sp. oral taxon 279 str. F0450 ctg120007683480, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 80001 33 100.0 34 ................................. GCCTCTACCACGAGGAACATCTACACCATAATGA 79934 33 100.0 34 ................................. GGTTACTTCGGACAGAAATCGGCTAATCAAGCCG 79867 33 100.0 37 ................................. GCCCAAACGGAGCATACCAATAGTAGGGCTTTGGGAG 79797 33 100.0 34 ................................. ATCACGCATATAGGGAAGGACATCAGAGGCAAGA 79730 33 100.0 35 ................................. TCAAAAGAGACTAATCTCTCCTTCGCCTTAGAAGA 79662 33 100.0 36 ................................. AAAAATATTAAGCCTTTTGAAGCTCAAGAATTGAAG 79593 33 100.0 33 ................................. TCGTTGCAGACGGTTAAGTATCCTTTCCTTCTC 79527 33 100.0 35 ................................. ACCACGACCGCGAGGAACCTCAACACCATAATGTG 79459 33 100.0 34 ................................. ATTTCGGTTACTCCCGAGAGCCCCGTCGTCAGCT 79392 33 100.0 33 ................................. AAGCCTATGGAAGGCGAGGAAGGCTACTACCAC 79326 33 100.0 35 ................................. TTCCACAACCTTAGTAGCTACATCAGCCATATAAG 79258 33 100.0 35 ................................. AAACTATTTGGCTTCGTACATTAGTAGCCTTTCAA 79190 33 100.0 36 ................................. AAAACCGTAGCCAAGCATATCTAGCAGACGAGACAC 79121 33 100.0 35 ................................. TTATAGTCCATTTCATTTAAAAAGTTGATAGTATA 79053 33 100.0 35 ................................. GGAAGGCATGAACTTACCATCTACACGAGTAAGGC 78985 33 100.0 34 ................................. TCAAGTTGAAAAGAATCTGGCTGATGCTGATGCT 78918 33 100.0 33 ................................. TCGTTTCTCCTTCGCAGTTGGATAGTATCTTCT 78852 33 100.0 35 ................................. TATTCAACCCGCTCTTACTAAGTTAATTACGGATT 78784 33 100.0 35 ................................. GGGGTGTAATCCACCCTCACGAGCAATATCCTCAG 78716 33 100.0 33 ................................. CTAAATGAGATGGACTACAAGAAAGCGCAGACT 78650 33 97.0 34 ...A............................. GTGTTCATCGTCCTGGTCGTGTCTTGGCTATGGT 78583 33 93.9 35 .........T....A.................. GCGTCTTTCATCGCGTGTCGTCGGCGTCGTTAGAA 78515 33 93.9 33 .........T....A.................. TTTTGTCCATTTTGTTGTGGTACTTATTTGTAT 78449 33 93.9 34 .........T....A.................. GCAGACAGCTGCACGAGCAACGAATGAAATCTCA 78382 33 93.9 34 .........T....A.................. ATGGCTATGTTACAAGCTACCGAGATGGGCAAGA 78315 33 93.9 35 .........T....A.................. TGCCGCAAGTCCCTCGACAACTGCGCCGCACTCCG 78247 33 93.9 34 .........T....A.................. TTGATAAGTTAGCGTTAGCTTGGTCTATGCGCGC 78180 33 93.9 33 .........T....A.................. GCGCCTCGTGGGCTTCGTCAATCGCTTGTCTAA 78114 33 93.9 34 .........T....A.................. TTCTTCCTCCTCCTCTTCTACCTCGGACAAGGTA 78047 33 93.9 34 .........T....A.................. CGCTACTCTGTCTGCGGAGAGTATGGACCCACTA 77980 33 93.9 34 .........T....A.................. ATCCCTCATAAAGGGCAAGACATCAGAAGCGAGA 77913 33 93.9 35 .........T....A.................. GTCTCTCGGTAAATACTTCCCAAAGTGCAAAGGAT 77845 33 93.9 36 .........T....A.................. TACCTTTTCACCAGGGTTTACCTCTCTAACGAGAGT 77776 33 93.9 34 .........T....A.................. TCGCAGAGCCCTACTATCGGTATGTTGCGCCTTG 77709 33 93.9 35 .........T....A.................. TGCTCTAGTCCTCGCATCGCAGGGAAAGCATTCCG 77641 33 93.9 35 .........T....A.................. CTGCTGTGTCATCGCTTGGAGTTTGCTTGGTCTTT 77573 33 93.9 35 .........T....A.................. GCTCACCTCTGCTATCCAGATGTGCAGCGATATCT 77505 33 93.9 33 .........T....A.................. GGTGCGTCTGATGTCTTCCGATGCCTCCCGTTA 77439 33 93.9 34 .........T....A.................. GTCTGCCTATCTATCCGAGTGACTGCCTTTGCGT 77372 33 93.9 34 .........T....A.................. ATCCGTAGATGTATCAAGCCCAAGACCGGCAGAG 77305 33 100.0 35 ................................. ACTGGTCAAATCGCTGGTAAAGGTCTCGGTTCCAC 77237 33 100.0 34 ................................. AGAAGATGTAGCCAGAAAGAGAACTATGCTCTAA 77170 33 93.9 0 ............................A..T. | ========== ====== ====== ====== ================================= ===================================== ================== 43 33 97.1 34 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : AAGCGCCTCCGCCATGTAGCCCGCATCTGCAAGAACTATGGGCAGCGAGTCCAAGCCTCGGTCTTCGAATGCCTCGTCGATCCAGCACAGCTCGTAAACCTTCGCCATGAACTCCTCTCGGTGATTGATGATCAAGAGGATAGTCTTCGGATCTACCAGCTAGACAAGCACTATCAACGGCAGATCCACGTCTATGGCAAAGTCACCTCTTTCGAGATCGAAGGGGAACTCATCGTCTAGTCTCCACTACCCCAAGCCTCTTCCAAAAATCCTACTGACCTCTCCCAACTCACCTTCTCCGTAAGTCCCCAAGCACATCCGCGCAAGCCTCCAGCGAACCCCAAGCGAACAAGTATTCCCTGCATCATCCGCAGGCACTGGTTATCAAATACATAACTAAAACCAAAACAATAAGCGTAGCCCCGACCTTCAGAGCAATATCTCGAGTCGCAGATTACGCTTGTTTATCCGCCCTATAATACAGAACTTTGCACCACACT # Right flank : ATTGACGTTATCCCTCAGGCCTTTTTCGATATTCCTCTAATCACACGTCTATGTTCCAAGGCTATAGGAGCTATTCTCTTAAAGCTTTCCCAAGATAATATCACAACAAGCTTTATTACTCCTCAACTAAAGGATTAAGGAATAGACTTGTTGATAAGCACTTCTGCTCAACCTACCCATAGGTGAATCGGTAACCTATCATAAATAGGAGATGATAGAATAAAGCAATAAAAGTAGGAGTAGCAACCTATATAGGTCAACGGGCGAAGCAATATTGGTTGACGAACGAAGCACTATTGGTCCACGCACCGACCACTATTGGTTTGCTCGCCGACCAATAGTGGTTGATACAGGGTCTCTGCAGAGAGCTCTGTGATATACAGTTTGCCCGCACCGCTTCAAGAAGGCGGTGCGGGCAAGCCATATGATAGTTGAGGGGAGGAAGGCTTTAGAAGTTGAAGTAGATGAAGGGCTGAGCGTCTGCACTTCTAATCTGAATG # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : GTCGCACCCTTCCCAGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //