Array 1 4329-2373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000611.1 Cylindrospermopsis raciborskii S14 NODE_1370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4328 36 100.0 37 .................................... TAAAGGTATTACTTTCATAAGAGGTATAGAGAGATTT 4255 36 100.0 37 .................................... CTAGTAGACCACGTAGTAAGTGTAGGTTGTAAATCGT 4182 36 100.0 42 .................................... AATGAAAGTTCCCATCGGGTTGACTTCCTAGGTCGTTGCCAA 4104 36 100.0 35 .................................... CAAGAACAGCATTATCCATGTCCATTTCATTTTCT 4033 36 100.0 42 .................................... ACCTCTTCAAGTATTTCCTCGATTTCACTGATACAACAGCGA 3955 36 100.0 39 .................................... GTGGTGTTGGTGGTCATGGTGTGGGGTTGGGAGTTGGTG 3880 36 100.0 40 .................................... TAAACGATAATAAACGATTAATACAAAAACAACAAATAAT 3804 36 100.0 41 .................................... AAAATATTTTCCAGTAAGTATTATTATTTTGAAGTGCTTCA 3727 36 100.0 37 .................................... GAAAATAGCACTTCTTTTTTGAATTTACTGTTTGTTT 3654 36 100.0 38 .................................... AAATCCTTGAAGGGAATGAATTTGTGCTAATCATTCCT 3580 36 100.0 39 .................................... GAATAGCCGGAAACAACCCGGGTAGAACGGGAATAGCCG 3505 36 100.0 38 .................................... AACAGTACAATTAGTTGTTTTGTACATTCTCTTGTTTT 3431 36 100.0 34 .................................... CAACGTAAATCGATTAACCCTTTTTTAACACAAT 3361 36 100.0 38 .................................... CCTCAAAATATTTTTCCTGGCTTTTTGAAACCAACTTT 3287 36 100.0 35 .................................... TGTTGGTGGGCATGGTGGTGTTGGTGGTGTTGGTA 3216 36 100.0 37 .................................... ATGAGTTCCAAGAAAGCATTTATGGTTGGGAAGTATA 3143 36 100.0 34 .................................... TTAAAAACGGCTTACGAATACAATAGCTTAACAA 3073 36 100.0 40 .................................... TATAGGAGCTAAAAGATATAATTTTTCAGAGTGTTCCCAT 2997 36 100.0 36 .................................... CCTCTTCCGTGAGGTTGATGAAATTCATTTTGGCAT 2925 36 100.0 37 .................................... TTTCATAGCTTCACTATCGCTTACTAGAAAGATTCCT 2852 36 100.0 38 .................................... AAGTGTAGTATCACATGATCCTCTTTCAAGATAATACA 2778 36 100.0 36 .................................... TATCGTATATACGATATTGGTCGTTATCTTCTTTTG 2706 36 100.0 42 .................................... AAGTAGAATCGAACACCACTGGTCGTTTGACCAGTGATTCTC 2628 36 100.0 39 .................................... CCAAGACAAATCTTTTAATTCATCTTGTCGACAGAAAGT 2553 36 100.0 38 .................................... AACCTCTGCATAGCAGAGACAGTCACAGAGGGGTTTGC 2479 36 100.0 35 .................................... CCGCTGGATTGTGGTGAAGAATGATAGAACTGCGG 2408 36 86.1 0 ........A.....................A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.5 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAGAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 150-1067 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000128.1 Cylindrospermopsis raciborskii S14 NODE_237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 150 36 100.0 37 .................................... GTGCGGCTTGGTGTGAATATAGTTTACAATTAAAACA 223 36 100.0 37 .................................... GTGTTAGTGGGGTTGGTGTTGGTGGTCATGGTGTTGG 296 36 100.0 37 .................................... AGCCAAATGAACTCTGATTCTTGCTGCCTTTTAGTGA 369 36 100.0 36 .................................... ATCTTCAATTACAGTGCCAGTACCACATCCCATCAT 441 36 100.0 39 .................................... CATCGGGTTGACTTCCTAGGTCGTTGCCAACTATTTTCT 516 36 100.0 36 .................................... TAAATAGATCTCTACCCGCTCTTAAGGATGTGGATT 588 36 100.0 37 .................................... TTATTAAATTACTGTCTAGATGAAGCACGAGAAGTTT 661 36 100.0 36 .................................... CAAAAAAGACAATCAGTCCATCTTGTTTGATCACAA 733 36 100.0 39 .................................... TTCTTCGATGAATTTGTTCTCGTTTATGTTTTTACCAAC 808 36 100.0 36 .................................... ACTTCTTAACCCGCTCATACCCCCCTATTCCCCTTT 880 36 100.0 42 .................................... AAATTGGAAGAAGGAGTGGAAGTGGAAGAAGGAGTTTCCTCC 958 36 100.0 38 .................................... AAACCTATTGACAAGGGAAACTTGACATGGTATATTGA 1032 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGGACAGAGACTCG # Right flank : CGCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 4716-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000149.1 Cylindrospermopsis raciborskii S14 NODE_267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4715 37 100.0 36 ..................................... TAGACTTGACAAGACTAAGCGCTCTAAATTGTTAAC 4642 37 100.0 38 ..................................... GGAGGTAACTTCGATGGGAACACATCAGATATCGATAT 4567 37 100.0 35 ..................................... GTGTTTTTTAGAACATACAGCAGAATAACTGATGG 4495 37 100.0 43 ..................................... TCTACCTAAGTAGAATTCTGCAAAGCCAGGAGCATAGGCAATT 4415 37 100.0 39 ..................................... TTTGCAATCCGCACTCAAAAGCGCATACATCAATCTCTC 4339 37 100.0 37 ..................................... GAGAATATCCAGGAGGTGATTACTCCCCTCCTAGCCC 4265 37 100.0 37 ..................................... CCATTCATGAATTATTTCTGAGTGGCTCATATCTTCG 4191 37 100.0 36 ..................................... CCTGACAAAAATTGACCCAAGCATGTCATTAAACTG 4118 37 100.0 41 ..................................... AATCTCAGATAAAGCTTTTTGAGACTTCAACTCATTTACTT 4040 37 100.0 36 ..................................... GTGGAACTAAATCTCTATTAACTGGTGCTTCCCCTG 3967 37 100.0 37 ..................................... GAATATTGGTGATGAGTAACTGGACACAGTCCAGTTA 3893 37 100.0 33 ..................................... CTCAACCAACCCTGACTCAGGGTTAACAGCAAT 3823 37 100.0 38 ..................................... ATGGTAGCATGATTGCATCTATTGTAATAGGTGACTAT 3748 37 100.0 35 ..................................... AAAAATTCAGATTCTTTCTCGAACCACTTGACAAT 3676 37 100.0 39 ..................................... AAGAAGAAGAGGAGGAGATATACCAAAATGAACATTACA 3600 37 100.0 34 ..................................... TTTTTTGGCTATCCCGCTTCAATTCGTTAATACA 3529 37 100.0 37 ..................................... TTTTTTGCGTCTTCTTTCCGCTTTCCCTAGCGGTGAC 3455 37 100.0 37 ..................................... CCTGTTTTTGGGGATAGAGTGTTGTCGGTTGACAGTT 3381 37 100.0 36 ..................................... AAAAGACCATTTCATTAACAAATGTTAATGTGTCTG 3308 37 100.0 37 ..................................... TAATAACTGCCGGATGTATTTCTGTAGGCTTTCTTTG 3234 37 100.0 40 ..................................... TAGTGTATCCTTAACATCATCTATAAGCCCATTTGCTAAC 3157 37 100.0 38 ..................................... AGATAGCCATAAAAACCGGGTATTAGACAGCTTAATCC 3082 37 100.0 38 ..................................... TTGCCATCTTTGTTGTCTCTTATTACCAGTACTTACAT 3007 37 100.0 40 ..................................... CACTTTATCCACAAATAGAGATTTAATAGACTTTATTTGT 2930 37 100.0 36 ..................................... AACACAAATCAATAAGATCTGAGACTAACCAGACGG 2857 37 100.0 38 ..................................... GCGGTTTTAGGTCGTGGCACGAGCTAAAACCCATGTCC 2782 37 100.0 37 ..................................... CCGGTAAAGGTGTTATCTCTAATACTGGTTGATTATC 2708 37 100.0 41 ..................................... AATGGCTATATTAATGTCCCCTAGTGTCGCACTCGACCCGG 2630 37 100.0 39 ..................................... GATATGTAGTACCGTTTAGATATCCTGGTTCGATATTTT 2554 37 100.0 40 ..................................... CAGCGCTATAAGGATTAAAACTGTGAATGCACATTACAAC 2477 37 100.0 35 ..................................... GGAAAACTGATCACACTGTGCTTAAACATTTATTT 2405 37 100.0 38 ..................................... CCTAACACCGCAATCAGTCCTCACCACGCCCGATAATC 2330 37 100.0 37 ..................................... TCTATGATGGTTTCCTTAGCGGCGGGTGCATCCCGCG 2256 37 100.0 36 ..................................... TAGTCATTTTAGGAGCTGTATAGTAGTCCTCTATAT 2183 37 100.0 37 ..................................... CCAGTGGTTTAACAGTTTTATTGCCGAATAGTAGCCA 2109 37 100.0 37 ..................................... AAAAACTCTTGCAACATCTTTTTGTTAAGTTATCAGG 2035 37 100.0 41 ..................................... ATCGTGCCAAACTCTATTACTTCTGCTAACAAAATTATCAC 1957 37 100.0 35 ..................................... TAGAAGGATACATAACGTTTTCAATCAATGATTGG 1885 37 100.0 38 ..................................... ATCTTGTAAACACAGGATAAGGGTTGAGGGGTGGATAG 1810 37 100.0 37 ..................................... CACAAATAAAGTCTATTAAATCTTTGTTTGTGGATAA 1736 37 100.0 37 ..................................... GAGGCTTACTTTAGTTTATGTAAGTCTCAACCAAAGT 1662 37 100.0 37 ..................................... ACACTATAATTAATAGTGGTAACAGAAAAAAATCTAA 1588 37 100.0 34 ..................................... AGTGCGACATTATACATTTGACCGTTCCAATAGA 1517 37 100.0 36 ..................................... ATAACTTAGACAGCGTGATATCTCCGGTATTGATAG 1444 37 100.0 36 ..................................... TGTTGTCAATAAATAAGTTATATTTATCATTCAAAA 1371 37 100.0 41 ..................................... TTATATGGAGTTTTTTTCAACTTTCCTTATTTTGCAAGTGT 1293 37 100.0 35 ..................................... ATTTTGCAAGTGTTTCAGCCATTTTTGGGTTCCGT 1221 37 100.0 35 ..................................... TGAGGAAATCCATCACACTAACTACCGTAAATCAG 1149 37 100.0 42 ..................................... GCGCATAACTACCCATTGGCACTGGGTTCATTCCAATCACTC 1070 37 100.0 38 ..................................... TCACCCGTAAAATCTACTGGCAAAAAAAATCTAGTTTC 995 37 100.0 41 ..................................... TGTGGGTATTGATCCGTCTGGTCAGGGTAAAGATTACACTG 917 37 100.0 41 ..................................... CTCGAGAAAAAACAGGGATTAGACGCGGTACGCTCTAATTT 839 37 100.0 39 ..................................... TTTGCAAGCATTGTCATACCAAGATTTGTCATTCTACTG 763 37 100.0 35 ..................................... CTGTAGTTACGTTAGCACCACCTCCCGGTAAAGGT 691 37 100.0 34 ..................................... GCGTGTCTGTGTACCCGTTGCGACCAAACCAGAG 620 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAAAATTGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 225-861 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000171.1 Cylindrospermopsis raciborskii S14 NODE_324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 225 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 303 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 378 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 452 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 528 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 600 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 673 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 748 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 825 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGTTCACCTCTCTGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGAG # Right flank : CTTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 4626-3927 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000029.1 Cylindrospermopsis raciborskii S14 NODE_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4625 36 100.0 37 .................................... GCGATCGACCCGGACTGGCTCACTTCCGCTTCAAAAC 4552 36 100.0 39 .................................... CGGCATCCCAGAGGAAGACCTTGCTGGGATTAGCATCAA 4477 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 4404 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 4333 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 4257 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 4186 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 4114 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 4037 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 3962 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGG # Right flank : ACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9058-12018 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000216.1 Cylindrospermopsis raciborskii S14 NODE_448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 9058 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 9132 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 9207 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 9279 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 9354 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 9427 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 9501 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 9574 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 9650 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 9722 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 9795 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 9870 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 9942 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 10016 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 10096 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 10172 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 10244 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 10316 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 10391 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 10464 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 10538 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 10609 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 10680 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 10755 36 100.0 37 .................................... GAAAAAGTAATAGAGCTATAGAGGGTGGGGTAGGGGG 10828 36 100.0 35 .................................... AATAAAATTATGAGAGTTCCAACAATAATCAACGT 10899 36 100.0 35 .................................... GGCTTGGAAACTTGAGGATAAGGACTGGTACGAGA 10970 36 100.0 35 .................................... GAGATTGATTATTGAAGGTAGCCGCGCGGCTACCT 11041 36 100.0 32 .................................... CAATGGGAGAAGTTAGCAGTGGGGAATTTAAC 11109 36 100.0 37 .................................... TATTACAGCCCTGTACCCGCTGCTGGTACCTACTATA 11182 36 100.0 39 .................................... GAGTTACCTCAAGAAGTAACTCCTCTTGAGGTAACTCCT 11257 36 100.0 39 .................................... CTATATTTCCTATAACTCCACCTGTAATAGAGATTGATT 11332 36 100.0 37 .................................... TGAATAATAACCCCACCAACACCACCAACCCCAACCT 11405 36 100.0 36 .................................... GTATTAGATAATCTAGATGATCCTAACTCTAACTGC 11477 36 100.0 37 .................................... TAAGGCTAAAGTAGATAGTAAACTAAAGACTTACGAG 11550 36 100.0 34 .................................... GTCTATATTATTAGTTATTAGACTTATTAGCTCT 11620 36 100.0 39 .................................... TAAGTTAAACCATGCGAGGTAGAGAAAGACTAGTAGGGG 11695 36 100.0 36 .................................... GTAAAGAGATAAAGAAAAAACCCCATCTAAGCAAGG 11767 36 100.0 35 .................................... GTAATCCTCCACTTCGATCCCTCCGTTATTTGCCC 11838 36 100.0 36 .................................... TTGAGAGGGACGGCCCTCATAAAGCCTTCCTCTTTA 11910 36 100.0 37 .................................... CAGGCGCATTGAGGCGATCGCGCAGGACAATTTGAAT 11983 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 41 36 100.0 37 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : GACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTAATATTATCCTCTTGTAACTTGATAATCTTTTTGAGTCGGGAATGCAAATCACGATATTGCTGTGTGCTTAGTTGACACTCAAATACGGAATACTGCACTCGCTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 1140-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000368.1 Cylindrospermopsis raciborskii S14 NODE_774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1139 36 100.0 35 .................................... TCTGGGCCTCAGGATCCCTAGATATAAACACTTCT 1068 36 100.0 38 .................................... CAGTAAACCCTAGCCCAGAACACCTCCGGTGGCATCGA 994 36 100.0 39 .................................... CTTCTTTCAACTTGGACAAGGTTTGGAAATCCAACAGTT 919 36 100.0 42 .................................... GGATTTCCCTGTGGTTCCATCTCATATTCCCTCGGAGGAAGA 841 36 100.0 40 .................................... CCTTTAGTTCCAGTAAACGATAGCCCCAAAAACCTCCGGT 765 36 100.0 34 .................................... AAGAAGTCCACCACTGGAAACTCTGCGTCTGCGA 695 36 100.0 36 .................................... TTAATTTAAGGAAATTACAGCAGAACTCTTCTAGTT 623 36 100.0 36 .................................... AGGGGAAAAAAATGACTACAACAAATAAAAATACAG 551 36 100.0 40 .................................... TACCAGGATTTATGGGTAGTACTCATAAATCCTGAATAAT 475 36 100.0 37 .................................... TTATTTTCCGTGCCTCTACCCGACAAAATAAATGTTC 402 36 100.0 38 .................................... CGGGGTTGTTTCCGGTCTACCCGGGGTTGTTTCCGGTC 328 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 307-2610 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000398.1 Cylindrospermopsis raciborskii S14 NODE_831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 307 36 83.3 35 T.....CCG..AG....................... TTCTCAAAAGGACACCAGTGTCTTGTGAGTGAGTG G,A,T [309,312,318] 381 36 100.0 38 .................................... GATTTTATAAGGTCTCGTTTTTCTCCTATAGGAGATAG 455 36 100.0 37 .................................... CTGGATTTTCGTCGAGGAATCTTTCTACTAAGTCCCC 528 36 100.0 37 .................................... TTAAAAAAGCAGCAAGAGAAAACTACGAAAGAGGAAA 601 36 100.0 36 .................................... TCACGCGTTAAATCACGCGCGACACATATCTCTTTG 673 36 100.0 40 .................................... TATCTGTTATCCAGTGGAGAGCTGGAGGAATGGTTAGGGG 749 36 100.0 38 .................................... CCAAAATGCACTTCCTCCACCTGACGGAGAAGGTAGTT 823 36 100.0 33 .................................... GGCGTCGGTTAACTTACGCTTCTCTTTTGTCTT 892 36 100.0 36 .................................... AATGACTCAGACGACCCCGCGCTTAAATCAGTAAAA 964 36 100.0 44 .................................... TCGTCAGTCGCAATCCCGAAAGGATATCGCGTAGTTACCACAAA 1044 36 100.0 37 .................................... GGTTGAGGTTAAGGTTAATGAGCTCACTCCCCAGGAG 1117 36 100.0 47 .................................... TAACCTTTCAGAGGACACACTCATTGAGGAGGAGTTGAGACTCCTCT 1200 36 100.0 73 .................................... GGTGTGAAAGTTGTAATACGTCCAACCATCTACAGAACTCCATTTAGCTGGATGAAACTCACCATCAATCTTA 1309 36 100.0 38 .................................... TTCATAACCCTATTGAGGTACATCCTCAAGCTCAACAA 1383 36 100.0 38 .................................... ATCATAACAGCGTAGGATGAAAAGCGCGGAGTTGACGA 1457 36 100.0 39 .................................... TAAAGAACAAAAAAACCCCATCGAAGCTCTTGCTTAGAT 1532 36 100.0 37 .................................... CTACTCTTAATGGTATATTAAACGTTCAAGTAGTGTT 1605 36 100.0 37 .................................... TGTCACGTGGATCCACGTGACACTACGGGTGGCTAGC 1678 36 100.0 42 .................................... TTTAAGTGGGGTTGACTCTCGCGCTATAGCTGCATTGCGCAG 1756 36 100.0 37 .................................... AAGAACAATCTCTTATCCAACTCCGCTACTCCACTCT 1829 36 100.0 37 .................................... TTTCTAGGAGTTCAAGAAAGGTAAGAGTATCAATCAT 1902 36 100.0 38 .................................... TCTTCCGCTACCCCTTCAAAGTAGTTCCAGCCAATCTT 1976 36 97.2 35 ...................T................ AAACTATCTCCCGCTACCGTGCTGAAGCACGCCCT 2047 36 100.0 40 .................................... CCTTGTCCAAAGCTTCTGTGGGGGTATTCAGATTGTCCTG 2123 36 100.0 48 .................................... GCCCGTCCGGGTCACCTACCCGACCGATTACGGCAAGTATAAAACCGA 2207 36 100.0 34 .................................... CTGCATACGAACTGCTCAAGTGAAAACAAAAAGG 2277 36 100.0 41 .................................... GTTGGAGCTTTTTCACAATATAACGTGATTGAAGCTCGTCA 2354 36 100.0 37 .................................... GCAGTATTAGAGTCTGTTTTGTTTTCCTTATCTTCTA 2427 36 100.0 37 .................................... GATCAGTGCAGGAGGGGCATCCTGTACGTTAAATATT 2500 36 100.0 39 .................................... TCGCGTGAGCGAAAGTCGCAGCAGAGCAGGGTTCAAAAA 2575 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 99.4 40 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : TAAATGAAACTCGTTTTTTAGCCTTAGTTTTATTAATTGTGATTGCTTATAGTTTAGCCACTATGTACGGTCAACGGATGAAAAAATTAGGGATAGAGACTTATGCCGGACGGATTCAACAACATCAGGACAATTACCCAAGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTACGGCATGGAATTATGGGCTGATTTAGCTCTGACCTTAATCGGTCTCAAACCTCATAAACGCCTCTTTTTCCAGCGTGGCTTTCAGGCTCTATCCCTTATTAAACAAGCTGTTTGACCACT # Right flank : CCCTCCATTTTAAGCCCTTGCTCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 923-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHV01000462.1 Cylindrospermopsis raciborskii S14 NODE_998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 922 36 100.0 40 .................................... AGACAAAACTATCAAGGCTGTCTATAGCTATTCTAAAGAT 846 36 100.0 34 .................................... TTTTCAACAGGCTCACAACCATCAACTGTTACAG 776 36 100.0 39 .................................... TAAAACATCAAAATGAGTTGTAAATTTCATAGTAATAAA 701 36 100.0 34 .................................... GTAATGAGTTGTATTTAAATGCACAGTTTTTGAA 631 36 100.0 50 .................................... TTCTTGCGCAGCTGCCCAACCCGCATTTTTCTGTTCTTGACTCAAATAGT 545 36 100.0 39 .................................... AATATTTGATTTAATTGACAAATCTTTAAAGGAGAATAG 470 36 100.0 39 .................................... AATATGGGTTTTTTACAGAAGGGTTTTCTATTGTTAGAT 395 36 100.0 37 .................................... TTACTGTAGATGCTGTCGCAGTTACGGTAACCACGCA 322 36 100.0 39 .................................... AAATATTGTCTCAAAAGTATTGACAAACCAAAAAGACTA 247 36 100.0 39 .................................... TTTTTAATTATTGGTTTTGTTTTACTATCATACTTTATA 172 36 100.0 37 .................................... GAAACAGTGCTAGTGGTTAATCGGAGGGTTAATACCA 99 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 12 36 100.0 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : CGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGG # Right flank : CAGTTTCCAGTGATCATTATTCGTTTGTAAGGCAGAGTCTGTCTTGACCTTCGCAAGAAGGAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //