Array 1 184594-185598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACTIA010000004.1 Acidiphilium sp. C61 isolate Acidiphilium sp. C61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184594 29 100.0 32 ............................. TGGACCCGGCACATCGTCGGCTCGCCCGCGCA 184655 29 100.0 32 ............................. TGGCGATGAAGATCGCGCCATGACCTCCTTCA 184716 29 100.0 32 ............................. TCCCTGACCAACAGCGGCTCGACTGCGCTTCC 184777 29 100.0 32 ............................. GTATTTCGCTTGCTTCCCGAGCCCAAGGAGGT 184838 29 100.0 32 ............................. TTGATTTTTCAAGTCCGGTGGCGCGGCGATCA 184899 29 100.0 32 ............................. CCCCATCCCCTGTCGGGGATGTCCCCCCAAGC 184960 29 100.0 32 ............................. TCCCTTCGGCGTCTTTCACTTCCTTTTCTTTC 185021 29 100.0 32 ............................. GAGGACCGGGAGGATCGAAAAGACGACGCCAG 185082 29 100.0 32 ............................. CCCTCGACCGTGAACAGCGGAGCGAATTTCTA 185143 29 100.0 32 ............................. GGTTCAACGAATGGCTTTCGCAAAAGGCCAAT 185204 29 100.0 32 ............................. GGTCAGGGGATAGCGCGGATCGCCTCGATCAG 185265 29 100.0 32 ............................. TGGCGATGAACGGCGTCAACCGTCTGAGCGAT 185326 29 100.0 32 ............................. CATCGTGATGCGATCCAGAATGCGCTGCACAT 185387 29 100.0 32 ............................. TGATCGTAATATTCCTGATAGACCGTATAGGT 185448 29 100.0 32 ............................. TGCCTGATGACCGGGATGACCGACATTACGGG 185509 29 100.0 32 ............................. GTTTTTTCAAGACACCGACGATGGCTATGTGC 185570 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GGTTCCCCCGTGCGTGCGGGGATAGGCCC # Left flank : CGCCTCCGGCGCGATATGCCGGACCAGCGATCTTCGCGGGACACTCGATGCAAAAATCCATCCAGACCGACGATATTCCGAATATTCGATTGCATTTCGACACTTCGATCGCGACGCTGAGGAAGCTGGACGATCTGCGATGCCGGCTGGGCCTGTCGACGTATGCCGAGGTGATCGCGGCGGCGCTGAAGCATGAGTACGACGCGCTCGAGGCCAGGCGACGGCTTGCATCCGCTCCGACGCCACATCCACCGTCGAGCTTCTCGAAGCGGGCCGCGCCTGAGCCAGTCGTGCCGGCCGCCCCGCGTCCCCAGGTTCAGGCGCGGCCGGCGCCACAGAGGGTGCTGGCGTTGGGTGGGCCGCGGCGGTGATCCCCACACTGAACGGCGCTCCGATAGCATTTGCCGCTTGCAGTTAGCCGGCCGGCTCCAATAGGCTGGCCCGCAAAATTTGCTCTTTGATATTGTATTTCGAGTTATTTCAAAGCCTTAAACCAAAGA # Right flank : CCAAAACGAGCGCCGCCGACCGGATACCCGCCATGAAGGCACTCGTTGGTGCTGTCTTGCGGCGAGCACCCCAAAGAGAGGTAATATGGCGGGGGGAGGAGTCCGTTTGTGAGCATCATTTCAAGCCGCCCGCCCTGGGGTAAATTTGACGCTGGCATTACCCATCATCTTGCGCACCACTGCGCCGATGTGGCCGCCTGCTTTGAGGCGATCGCCGATATCCCGACCATTCGCCTCCGTATGGAACATTCGGCCAACAGATCGCTATCAACGGCGGATATCAAGCGCCTGGCGGTCCTTGTGTTCCTGCACGATGTCGGCAAGCTCCACCCAGGTTTTCAGGCCAAGGGGTGGCCCGAAGCCACGTGGCCTGGCGGCCGACATGGGCATGTTCAGGAAGGGGCAGCCCTCTTTCAAAGCGGTGCTCCGGAGGAGGTCAGGGAATCCCTGTGCTGGGATGAGCTGAATGAGTGGGGCGTCTTTGACGACGGAGGTAACCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGTGCGTGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 194586-195712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACTIA010000004.1 Acidiphilium sp. C61 isolate Acidiphilium sp. C61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194586 29 100.0 32 ............................. TGGTGCCACGGGTGCCGCAGGACGCGAAGCCA 194647 29 100.0 32 ............................. CTTGTGGGCAAGCGATGCGATCGCCTTTCGTC 194708 29 100.0 32 ............................. CGGAATGCGCTTGCCCTGCGGGACGCCAAGGT 194769 29 100.0 32 ............................. GTCACCTGCTCCGCGCTGCGTGCGTCCAGTGC 194830 29 100.0 32 ............................. CAAACGTGGCCATCAACGGCCATCTCCTGACG 194891 29 100.0 32 ............................. CATCGTTGGGGCCGCGTTCGCCTGCCAAAGAT 194952 29 100.0 32 ............................. GGGAGGGGCAGCCGGAGGCGCGTCGGGAAGGC 195013 29 100.0 32 ............................. TGGTTTCAGGCCGATCTCTCGACCCGGTTGAA 195074 29 100.0 32 ............................. TGATCCGCATGGCCCGGAACAACATCCCGCTG 195135 29 100.0 32 ............................. CCCGGCTCCCGCTCCCACCGCTCCCGTTGCGC 195196 29 100.0 32 ............................. ATAACAGTTACCGGCGGCCCGTTTCGTTTTTT 195257 29 100.0 32 ............................. GCTGCCTCTCTCTCCTGCCAGTCCTGGCGCTT 195318 29 100.0 32 ............................. TTGACGGTTGCCGAACCGCTCGCGGCGATGCT 195379 29 100.0 32 ............................. AAGACGCTAATCTCGCTCTGCAATGCGTTCAT 195440 29 100.0 32 ............................. GACCAAGGGGGCCAGCACGACGGGCGATCGCT 195501 29 96.6 32 ..........................T.. ATCCGCCAGACTGAGCCCTTCACGCTGAATGT 195562 29 96.6 32 .........................A... ACGTAATCGCCCTGCGGCATGTCGAACGACAG 195623 29 96.6 32 .........................A... TCGGATCGGGATCTGGATTATGTGCGTGGCCC 195684 29 93.1 0 .........................AA.. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GGTTCCCCCGCACGCGCGGGGATAGGCCC # Left flank : GAGCGGCTCGCACGTAGGCGCGCCGCTATCTTGTTTCGACAGCGAGGCGTCATTCCCTCGATGATCGACAAGATCAAGCTGCTGATTGTCCCCGATCGGATGGAGACAAGAGTGGAAGGCGTCGACTGATGCCGATGGTTGTGGTCATCACCCGCGACGTGGAAGCGAGGTATCGCGGCTTTCTCGGTTCGGTCATGCTTGAGCTTGCGCCAGGCGTTTATGCTAATCCACGCCTGAGCGCCAGCGTGCGCACCCGTATTTGGGAGGTGCTTGCCGATTGGTATCAGCAACTCCGCCGCGGCAGTCTTGTAATGATTTGGGCTGAAACCGCAGCTAACGGCGGCATCGGTCTCTCGAGTCTGGGCGAGCCACCGAAAGAAATCGTCGCCCATAACGCACTGCTACTCGTGCGTCGTTCGTTTTCAGAAGCGCGTCCGCGTGGCTGATTTTTTTGCTCTTTGACATGGTTTATCAAGTAAACCAATATGTTACCTATCAGA # Right flank : CGTTTTTGGCGATGCTGGGCGGAATGAAAGTGTGGTTTGTCAGCGGCCTGATGATTTTGTGCAGATCGTCGTCGGTCATGGCTCGCCTTGCTCGTCGAAATTCGAATTTTCTGGTGCTCCACCACGAGCCCCTTCCGGACTCACCCCAAATTCATCTGGTCATGCCCGCATAATTCGGAATTTTCACGCCGTTCTGGGCGATCGATAAACCGTCGTTCCATCATTTCCGTCGAAAATTTCGAAATACGTCGGATATTCGGCAGCTTCGGTGTCACCCGCGTCGATCGCGTGCTCGATTTCTCGACGCTACTCCTCGAGCCATTCATTTCCGCAGGCGCGGGCCTGACTGATTTCCTCGAAGTTCTGGGAAATTCGAATTTCCACGTTTTGGCGGCGTGGCCACCGTGCCATCGCTTAGCTGTCCGCCCGCATCGAGATAACGGAGAATACAATATCTAGTTCTACAGAGATAATATTTCCGATGCATGACTCAGCGAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACGCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //