Array 1 1691416-1692406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017671.1 Providencia rettgeri strain RB151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1691416 28 100.0 32 ............................ TAATTTAATTTCCATTGCTGTTTTCCTCATCT 1691476 28 100.0 32 ............................ TTTGACACCTTTTTCACCGTCAAAAACAACAA 1691536 28 100.0 32 ............................ TACGATAAACATCAGTTAGTGGGTATCCAAAC 1691596 28 100.0 32 ............................ ATGAGCACGCTAAGTTGATTCGGCGATAAACA 1691656 28 100.0 32 ............................ TGACCACGTCACCGTTTCACCAACTATTGATG 1691716 28 100.0 33 ............................ TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT 1691777 28 96.4 32 ............G............... AGTGCAAACGTCGATTAATGGCAGCGTAGTAA 1691837 28 96.4 32 ............G............... AGACATAGAGCTATCAAGAACCGCCTCAGCTC 1691897 28 96.4 32 ............G............... GAAAAGATAAGTTCTTGGGCAGACCTGAGACA 1691957 28 96.4 32 ............G............... TTTTCCTTTGTTTTATCTATTCACGTAAAACA 1692017 28 100.0 33 ............................ CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT 1692078 28 96.4 33 ............G............... ATCGCCGTGAAATCAGACTCAGCGAATCGAATG 1692139 28 96.4 32 ............G............... CGAAGTGGAAAAGAAAAGAGCAACTATTGATT 1692199 28 100.0 32 ............................ GGAACTAACGCGGCTACGCCATAAATTATCGT 1692259 28 96.4 32 ..........G................. TCATGCTGATGAATGGGATCAGGATGTTCTCT 1692319 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 1692379 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGCACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1701043-1701672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017671.1 Providencia rettgeri strain RB151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1701043 28 100.0 32 ............................ CAATCCATTTGAGTGCAATCTAAGTGGCTAAT 1701103 28 100.0 32 ............................ TGACTTAGTTGACGCAGAGCGGGGGTATCGCA 1701163 28 100.0 32 ............................ TCAATAAATGTTGCTGATACAGAATAAACACC 1701223 28 100.0 32 ............................ ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC 1701283 28 100.0 32 ............................ CTGAAACATTAGAAAGTCGTGCTCAAGATATT 1701343 28 100.0 32 ............................ TTACTCTGATGCTACGTTCGAAAAAGCGTGGA 1701403 28 100.0 32 ............................ GGATCGCAATAATTCGACTTCAAGCTCTACTC 1701463 28 100.0 32 ............................ AGCGAATATCAACGCACCCACCGTGTCGATTT 1701523 28 100.0 33 ............................ CGATGATTCAACACCAACAAGCGCATGTAACGT 1701584 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 1701644 28 89.3 0 ...T......A.........T....... | G [1701670] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCGGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCACAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACTAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATGCTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //