Array 1 244724-246703 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWC01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2888 NODE_1_length_414531_cov_0.2479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244724 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 244785 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 244846 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 244907 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 244968 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 245029 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 245090 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 245151 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 245212 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 245273 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 245334 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 245395 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 245456 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 245517 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 245578 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 245639 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 245700 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 245761 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 245822 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 245883 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 245944 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 246005 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 246066 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 246127 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 246188 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 246249 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 246310 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 246371 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 246432 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 246493 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 246554 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 246615 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 246676 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 263261-266159 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWC01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2888 NODE_1_length_414531_cov_0.2479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263261 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 263322 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 263383 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 263444 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 263505 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 263566 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 263627 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 263688 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 263749 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 263810 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 263871 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 263932 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 263993 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 264054 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 264115 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 264176 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 264237 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 264298 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 264359 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 264420 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 264481 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 264542 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 264603 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 264664 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 264725 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 264786 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 264847 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 264908 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 264969 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 265030 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 265091 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 265152 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 265213 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 265275 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 265336 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 265397 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 265458 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 265519 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 265580 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 265641 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 265702 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 265764 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 265825 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 265886 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 265947 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 266008 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 266069 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 266130 29 100.0 0 ............................. | A [266157] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //