Array 1 155483-154295 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXB01000136.1 Escherichia coli strain A210 NODE_3_length_180716_cov_86.6715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155482 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 155421 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 155360 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 155299 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 155238 29 100.0 32 ............................. CGGTAATGCGCGGTATCGATCAGCATCCGGCT 155177 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 155116 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 155055 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 154994 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 154933 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 154872 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 154811 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 154750 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 154689 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 154628 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 154567 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 154506 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 154445 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 154384 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 154323 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1313-551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXB01000181.1 Escherichia coli strain A210 NODE_19_length_86949_cov_89.0298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1312 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 1251 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1190 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 1129 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 1068 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1007 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 946 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 885 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 823 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 762 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 701 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 640 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 579 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //