Array 1 139027-137905 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDQ01000003.1 Clostridium botulinum C str. Eklund gcontig_1106103624352, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 139026 29 69.0 204 TGAA.....G..G.....T...AT..... AGAGTTAGATTACATAAATTTGCAGTATACAAAACAAACGTTCTTATATATTAAAAGCATTGATTTTCCTAAGGTTTAATAACATATTTTTTAAATTCAAAAAACACAACCGAAGGTTTACTGCAAAATTGGTGAAATTAGACTTTGAGCCATTTAGCTTAAACATAGTAATACCAGTGTATTTAAGTATATTTGATTTTAGGG 138793 29 100.0 37 ............................. TTAATTCTAGAACTTCTAACACGCATGATCTTAAACA 138727 29 100.0 37 ............................. AACCAATCCACGCTAATGTTCTCAATTCATCACATCC 138661 29 100.0 38 ............................. TTATCAAATTCTTTAAAAGGCTTTAATATTTTTTTCAA 138594 29 100.0 36 ............................. TTAAAATTTTTGCTCAAATCATCAAAATCACGCCGT 138529 29 100.0 37 ............................. TCGAGTGCAACATTAGCAGTAACACTTCCTGTTCTAT 138463 29 100.0 38 ............................. ATTATCCAAGCTACCTTGAAGTTTCCATACCTAGTTTT 138396 29 100.0 36 ............................. TTTTTCTTCATAATCTACTATTTATAACTTTATTTT 138331 29 100.0 37 ............................. AAACAAGAAGATAAAAAACCAACACGTAGACGTAGAC 138265 29 100.0 38 ............................. CTTTAACGCTTGCTGACCTGCATATTTTCCACTTTCAA 138198 29 100.0 37 ............................. TTATATTGTACGATTTTGATATTAACCCTGTATATTC 138132 29 100.0 38 ............................. CATGTTTTTTAAATCACTACTATTTATTTTTGATTCTA 138065 29 100.0 37 ............................. TTTGTTAGTTTAAAGAAAGCAGCAAATCCAATTACTT 137999 29 100.0 37 ............................. TTATCTTATAATTGTTTTTCTCTTTTCTCTAATACAA 137933 29 69.0 0 ...............A.CAC..GTAT.T. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 15 29 95.9 49 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATATCTAGCTATTACTCCAAGAGATAATGCAATGAAAGTAATTGGATTAGATAATTTATTTTGTGGAGGAGAAAAATCTGGACTATTTGTAGGACATACGGAAGCAATATCTACGGGATCTCTGGCAGGAGCTAATGCTGTAAGACACGCAGCAGGTAAAAACATGATTGTGCTTCCAAATGAAACAGTAATCGGAGATATTATTGATTTTGCAAATAAGAAATTTTTAAAAGATAAAGACAAAAAAAGTAGATTTACATTTGCGGGATCAATATACTTTAATAGAATGAAAGAAATAGGACTATATAGTATAGATAGCAAACAAATAGAAGACAGAATAACAAAACTTGGTCTAAAAGGAATATTTAACGAAAAAATTATTTAAATAATATAGGCACCCTAAAATAAAGTGCTCCTTGACAAGTATACAGTGGAGCACTTCAAAAGGTGTCTTTTATTTTTTATAAAATTTCTTCTAAATAAATAACTATCAATTACTA # Right flank : TCATTTAGTTTTTTTACTAATATCGTGAAAGTTTTAATGGGTTGTCACATTAAAAAGTCTAGTGTGACAACCCATTTTAATAAATCTATTTAACTTTACATTCTATCCAATAATGCTGCTCCAATGATTCCAGCATCATTTCCTAACTTAGCCTTTTCTATTTTGCAAAGTTCTAGTCCCTTAAATAGCTTATGTTCTTTTATGTATTTTATTAGTCTATCCATGAATAAGTCGGAACCTGCAACTACTCCACCACCTATTGAGATAACATCTAAATCCAATACATTTATTATATTATTTATTCCAGTCCCTAGGTATTTTATAAATCTATCTAGTGTAAGATTTCCAACCTTGTCCCCTTCTCTTGCAGAGTCAAACACAATTTTTGCATCAACTTTGCTTAAGTCTCCTTTAACTTTATCAGTTATTATACTTTTTTCTCCATTTTTTATTAATTCTTGAGCATATTTTATAATTGCAGTAGCGGATGCAAATGTTTC # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 151814-152302 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDQ01000003.1 Clostridium botulinum C str. Eklund gcontig_1106103624352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 151814 29 100.0 37 ............................. ATAAATGACTTTATTAAATATGAAAAAGAAATAAATA 151880 29 100.0 36 ............................. ATCACTAAAAAATCTTTTGGTGTTCTCATGAAAATA 151945 29 100.0 39 ............................. CCTGTAGGGCTTCTTTTACTTTAGGAGGGAAACATGGAT 152013 29 100.0 36 ............................. ACCTTTTTTAATATATTTTTGAAAAGCTTGTGAATA 152078 29 100.0 36 ............................. AAGTATGCAGTAATTAGTTGTGGTAAGGATAATATT 152143 29 93.1 36 ...............A..........C.. ACAATGGCAGAGTAAAGACTAGATTTCCCATTATCG 152208 29 96.6 37 ...............A............. AAAAACGGAATGCCAAGCATGAAATATATTAGATATG 152274 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ACATTTTATAGGAGATGAAAAATACAAACCTTTAAAAGCGTGGTTGTAATTATGTTTGTTATATTAACTTATGACATTGAAGAAAAAAGAATAAATAGGGTAAGAAAAACATTAAAGAAGTATTTAACTTGGACACAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGAAAATTGCATAAGTGCTTATCAGAGATAAATAAGAATATTGACAAAAAAACCGATTTAATATACATTTATAGAGTAAAGATGAGTAAAAATATAACCAAAGATGTAATAGGAATAGAAAAAAGTTTTGATGAACTATTCTTATAATTTGCAGTATATCAAACAAAAGTTCTTACAGTCTCAAAGTATTGATATATCTAAGGTTTAATGGAGTTTTTTTATAATTCAAAAAACACTACTGAAGGTTTACTGCAAAATTGATAAAATTAGAGTTTAAGCCGTTTAGCTTAAACGCAGTAATACCAATGTGTTTAGGTGTTTTCAATTTTAGG # Right flank : TAAAGATATTTATTATAAATGTATACAATTTCAATTGTAAAAGGCATCTTTCAGCATTTGATATTCATAATTAATCCATGAAAGGTATATGTTTCAAAATTACAGTTGGTGGTTTAATAATAGATCTCAAAATGATATAATGAAATAAATTATACATTAGGAGCTGAATGAATGGAAATTGAAATAAAAAGCATACTAAAGAAAATTATTGTTAAAGATGATAAAGTTAAAGTAGAAAGACTTGAAATTGCAAATGATGAAATAACTGAAATTAGATATCAGATGGCAACTGTATGAATACAAGGTTTTATAACATTTTGTACCGAAAAAGGTGGTCAAAAGGTACATAGTTTAAATGATGCTACATTAAACAAAAATAGCATCACATTTTACTATGGTAATAATGAAAAGGTTGAAGAAATTCTAAATCACTTTTCTGAGAAGGTGAAATTAACGGAATTTACCGACATCAAAAAAGAAAAGAAGTCAAAAACTAAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : GTTTTATATTAACTAAGTGATATGTAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //