Array 1 59688-58820 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFVR01000021.1 Kurthia sibirica strain ATCC 49154 NODE_21_length_61944_cov_107.714642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 59687 29 100.0 36 ............................. CGAAGAAGTCACGCAAGGCTACGATGATAGTTATAT 59622 29 100.0 37 ............................. ACATACGAAGTAAACGGAAATGGCTATAAAATTTTAA 59556 29 100.0 36 ............................. CGCTGTAGCAGATGTATCTAAATCATCGAGTAACAA 59491 29 100.0 35 ............................. TTAGTATCTTTCGGGATTGCAATATCTTTAAAAAT 59427 29 100.0 35 ............................. AATTGTGAAATATCGAAATCCAACACTTGAGATTT 59363 29 100.0 37 ............................. TACTTTATTGAGTGGCTAAGGTGTCTATATAAAGTAT 59297 29 100.0 34 ............................. ATGGCTGACGTAACAAATGACTGGGATATTGTCG 59234 29 100.0 35 ............................. AGAGCGACTTAGACGAGCCGAGGCGCTACTTGCAG 59170 29 100.0 36 ............................. AAATAGATGATGAAGCGTATTTAGTTCCGCAACATG 59105 29 100.0 36 ............................. GTTGTTCTTTTCTATAGACCAACAATATCATCTTAT 59040 29 100.0 35 ............................. GCTAGTCTACGAAAAAGACGAGTCGGAGCAACTTG 58976 29 100.0 35 ............................. GATTAAACAGTAAACATTAATAAACGTTGTCATAC 58912 29 100.0 35 ............................. CCAACTTAAATGACTAGTGGCTGCTGGTAACTCGA 58848 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 100.0 36 CTTTAAATCCCTCTTAGTTCAGATAAAAC # Left flank : AGAGTTCCTTCGTACTTCTTGCTAAACGATCCAATTTATACACAACAAAACGGTCGCCTTTGGCAGCGGCCTTAATAGCCTGTTGTAACTCCAGCCTTTCTTTTTTCCGTGAAGAAATCTTTTCCTCATAAATGACACATTCCTTTTGTTGCTCCTTCGCGTACTTTTCAATGGCTTGTCGCTGCATATCTAAATGTTGATCTTCTGTACTGACACGGATATATCCAATGATTCTCAATTTTCTTCACTCCTATTAAAAATACGCATTTTAGACTTTTTTTATTCCTCAATATGTCTACGTCCATACGTTTTATAAAATTTTAAGTATAGACGAGTTTATAGACAAAAACCACTAAAAAAACACCCCTTCAACATGAATTGAGGGGATGCTTTTAATTTGTCTATAAAACGATGGTTTTTTAGAGTGTTTGATTTATCTCTATTTTGAATAGCTATCGTATATTTCTATTCAATTTACTGTTGCCATTCCAGTTTAAGTA # Right flank : AGCGGCTTAAAACCCTATTAGACTAATGTTTTCATTCTACATTTAGCAGCGAACCCCTAGTCGTGTAAATCAACAATTTCAAATTAACGGCTTAAAATACTGATATAACTAGCTTTCTCTTGTTTTTTCTAAAAAAATCCAGGATGCACCAATTAAAAAAATATATCCATATCACCTTTTTCATGCCCATGTAATTCTTTCTTTAGATGGCGTGGATTCTCTATAATATAATAGTATAAACTATCTTGCATTGGATCAATAATAGATTCTACCGCTTTTCTACATTTTAAAAATTGGGTTTTTGTAATTTCACCTTCAAATACTGAATTTTGAGTCCAAGTTAAATATTCTTTCAATTTTTTACAAACTTTTCCTACTCTTTTTTCATTCACATCATACGTAATAATAACAAACATATTTTCACCACCACGCTTTCAATGGTTTATATGTTGTATCACCAATTACATGTTTAATCAATTTATAGCACTCTAGACGAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCTCTTAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 148992-147696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFVR01000003.1 Kurthia sibirica strain ATCC 49154 NODE_3_length_227594_cov_114.728194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 148991 32 100.0 35 ................................ GGTAAAAAATACGGGAATGGTAGCAAGCCTAGCTG 148924 32 100.0 35 ................................ CGTATCGTCGAAGTGACGGTGCATTAAGCAAAGAA 148857 32 100.0 36 ................................ CAGCCCCATAATCCACCCACTTCTCTATTTTTAGGT 148789 32 100.0 35 ................................ GTGTCTAATCAAAGCGATACTAAAAATTATCGACG 148722 32 100.0 35 ................................ ATTTCATATCCTAATTTTAACAATGAAACTACTTT 148655 32 100.0 33 ................................ AATATGAACGCAATCGAAAAATACGAAATCGAA 148590 32 100.0 34 ................................ TATAGAAAGAGGTGAAAAAAATGGAACGTACATT 148524 32 100.0 35 ................................ AGTTTCAACACTTAATGTCGTAACGACAGAAAAAT 148457 32 100.0 36 ................................ TTCATGATATTTTGATAGTAAGTGTCGGATAAGCTC 148389 32 100.0 35 ................................ TATTTAATTCAAATTGTTGGTATAAAATATCTTCT 148322 32 96.9 36 .......................A........ TACTAATTCGACTCCTGAAGCTGGCACCGGATATAT 148254 32 100.0 33 ................................ ATATCTTTTGGCTGCAAAACGGTTTTAAATTTC 148189 32 100.0 33 ................................ GTCAAACGACTGCAAAGTTGAGATACCGTCAAA 148124 32 100.0 36 ................................ AAATTATTAACATCTCCAACGTATTTTTCGGAGCAA 148056 32 100.0 33 ................................ TAATAATAATTGTACAGTCGGTAACCATTCTTG 147991 32 100.0 34 ................................ GAACTAATCGCAGAAGGTAAATACGAGGTAACAA 147925 32 100.0 35 ................................ ATGAAACGTGCAGAAGCCAACCCGAATTATCGTGG 147858 32 96.9 33 ..........G..................... CCGATGCGTTAGAAATGGCCATTAGCGTAAGCG 147793 32 100.0 34 ................................ TTATCAGGTAATTGGGTGGATTCAATTGGGCAGT 147727 32 90.6 0 ......................A.G...G... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 35 GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Left flank : GGAGATTCAGAAGAATACCCGCCTTTTTTATGGAAATAGGAGGATACACGCATGCTAGTTGTGATTACTTATGATGTGAAAACATCAGGTGTAGGTGGCAATAAAAGATTAAGACAGGTCGCTAAAAAATGTGAATCCTACGGTTTAAGAGTACAAAATTCAGTTTTTGAATGTAATATTGATGCTGCACAGTTAGTTAAGTTAAGGTATGATTTAATCAAAATTATAAATGCGTCAGAAGATAGCTTACGATTTTATAGATTAGGTAATAATTACAAATCGAAAGTTGAACATATTGGTACAAAAGATACATTTGATTTAGATGAACCACTTATTTTTTAAGTGCGAACTATAAGCTCTCATAAAATCTTAGGGGGGTTCGCACCTGTTTTTAGCAAAAAGGATAATATATAATAGATGATTTATCCAAAAAAAGTAAATAAAATAAAAATAATGTTATTTTTCTGTTTTATTTACTTTATATTATCACTTTTTTTGCA # Right flank : TGTATAAAGAGCATGAAACAAAATGGTTGGGACTGATCCCTTCGGTTTAGACAAAACAAAAAAGCACCTTCAAGAAATGGGTATAAATACCTGTTATTCTTTGAGGGTGTATTTTTTATGGGCATATGTATAAGTGATCCGATGAACTTAAAATAAAAGTTATTCAGATGGCATTCGCTGGTGCTCCAATCAACCGGATTTTAGTTTTTAACTTATAAATTCTCGAAAAGTACTTAATTTTCTTATTTATAATACAATTGAAATTCTGTTCATAGTTTGAGAAAACGCTATCATTTCTATTTTTTTTACTTATAATAAATTCAAGAACAAAATATGAGGGCGTGAACATAATTTCACGTGATTGTGAGGTAAGTCCATGTATTCAAAATTAGAAATGATTCAAGTTGCAAAATTATACTATGAGATGAATTTAACTCAAAAGGAAATTGCTGATCGCTTAAGTTATTCAAGGGCGACCATTAGTAGAATTATTGATGCAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //