Array 1 260781-262400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQCR01000002.1 Streptococcus agalactiae strain RBH02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 260781 36 100.0 30 .................................... GAACGCCACACACGGAATAAAATCCGCTGT 260847 36 100.0 30 .................................... TACAGAGACATCAAGCCATATTATGACACA 260913 36 100.0 30 .................................... AGTTAATTTGTAATCTTCAAAAAGCCTTGG 260979 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 261045 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 261111 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 261177 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 261243 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 261309 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 261375 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 261441 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 261507 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 261573 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 261639 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 261705 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 261771 36 100.0 30 .................................... GACCTCCTCGAAATTGCTATCATTCCATAT 261837 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 261903 36 100.0 30 .................................... TCCTCTTTCTATGTTTCAATTGCCAATTTT 261969 36 100.0 30 .................................... AAAAAATCTTGAATCATCATATAAAATCTT 262035 36 100.0 30 .................................... AGCTATCTTTTTCGTACTTTGAAATAGTTT 262101 36 100.0 30 .................................... TGGAAAAAGGGCAAAGTATTCTTGATTATA 262167 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 262233 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 262299 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 262365 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //