Array 1 1360139-1357642 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018447.1 Helicobacter cinaedi strain P06D0798 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1360138 36 100.0 31 .................................... TTGACGGGTATTTCCGAAAAAAAAATGATAA 1360071 36 100.0 30 .................................... ATTCAAACATGCTTCTGATACAGGAGATTT 1360005 36 100.0 31 .................................... AGATTTTTTCCTTGATTTTCTCGTTAGCTCC 1359938 36 100.0 30 .................................... TGGAATTGTTTCTTGGAGGAAAACTGGCAC 1359872 36 100.0 31 .................................... CTGAAAAAACGCTCAATGAGTGGCTAGAGAA 1359805 36 100.0 30 .................................... TTCGCACTCCTCTATTTTAAAATCGTTTTT 1359739 36 100.0 31 .................................... CAAAAACTCCTTTGGGTTAAAAAAAAAAAAA 1359672 36 100.0 30 .................................... CAGCAGCGGCAGTATTCTATGCAACAGAAT 1359606 36 100.0 30 .................................... ACCTATGATTTTGATGTCGATAGCGAGGAT 1359540 36 100.0 31 .................................... TCTTTCACTTGCATATGATGAATGGAGACCA 1359473 36 100.0 32 .................................... TTCACAAAAAGCATTTAATGAAACTATGCTAA 1359405 36 100.0 31 .................................... AGATTCACGATACAATAAAAGCAAGTCATTG 1359338 36 100.0 30 .................................... TTTTTTCTTGTTTTCGTCCATAATATGTCT 1359272 36 100.0 30 .................................... ATTGTTTGCCTCTTTTAAAGAATGAAGTTA 1359206 36 100.0 33 .................................... TTTTGCTTTTAGATCTTATGCAAACACTTTTAG 1359137 36 100.0 31 .................................... TCATTTTTCCACCTCCCCATTTTTTTTAGCT 1359070 36 100.0 30 .................................... GTTATTCCCTCTGTCCATATATAAGCGTTT 1359004 36 100.0 30 .................................... TTTTTCGCCTGTTACTTCACTCTCTAAAAT 1358938 36 100.0 30 .................................... TTCAAATATTTGGATATATGGGATACTGAA 1358872 36 100.0 30 .................................... CTCGGCCTCGGCGTAATCCCCGATGTCGTA 1358806 36 100.0 30 .................................... CCCATGCCCTGTGGCAAGTGTCTTGCTTGT 1358740 36 100.0 33 .................................... TAGTTTTGCTTGCTTAAAGTCTTTTAGGCTTTT 1358671 36 100.0 30 .................................... CAACTCTCAAGGGGCGTTTTATTCCCCGGT 1358605 36 100.0 30 .................................... CAACTCTCAAGGGGCGTTTTATTCCCCGGT 1358539 36 100.0 31 .................................... TTGACTGCCACGATTACCGCGATATGAGCTT 1358472 36 100.0 31 .................................... ACTTAAACACATCGTCCCCGGTGAAAGCGGA 1358405 36 100.0 30 .................................... GTTTGGATATATGGGGGCGAAGGACTCAAA 1358339 36 100.0 30 .................................... ATTCTTGGAGTCTTTCGATCACAATTTTGA 1358273 36 100.0 30 .................................... ATTATTGGATTTCTTTCAATTCGCCCAGAG 1358207 36 100.0 30 .................................... AGGACAGCCGCATACAACGCCCCGAATACC 1358141 36 100.0 30 .................................... GGCAGCAAATCAATTCTCCAAATCAGTGAA 1358075 36 100.0 31 .................................... TCAGAATCAAGCTCGAGTCCCTCGATTACGA 1358008 36 100.0 31 .................................... AAAAAAATCGTAGAAATCATAGAGAAAATCA 1357941 36 100.0 30 .................................... CTCTGAACCCTTTTTCTGTGACTTCAATAT 1357875 36 100.0 30 .................................... ACAGGTTTTTCCACATTGGAGGAATTTTTT 1357809 36 100.0 30 .................................... AAGCTAAGTTACAATGTGATTGTGAAGTAT 1357743 36 100.0 30 .................................... TGTTTGCTAAATTTACTAATCCTTTATTTA 1357677 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 38 36 99.9 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1850477-1851770 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018447.1 Helicobacter cinaedi strain P06D0798 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1850477 36 100.0 30 .................................... ACCACTATTTCTCATATCGCGTGTAATCTT 1850543 36 100.0 30 .................................... TGTTTAAGGGCTAGATTCTACAAAGCTTTA 1850609 36 100.0 30 .................................... AAGATTTGCACAGAGTAAAGAGGCAAAGAG 1850675 36 100.0 30 .................................... TAAACTTCTCCCTATTGCGTGGTGTTTTTT 1850741 36 100.0 30 .................................... GGTAGATTCTGCGATGCACGAGCATATCAA 1850807 36 100.0 30 .................................... ATGTGATATTGATGTAAGCAATCGTGGATT 1850873 36 100.0 30 .................................... ACTTCACTTAGGTTGTTTGCAGCACCAGAG 1850939 36 100.0 30 .................................... ACATTTTTATCGCAAATTCTGGAATCTCTT 1851005 36 100.0 30 .................................... TCGGTTGGCGGAATTGCTGGGGTGTGTAAT 1851071 36 100.0 30 .................................... AACCGGCTCATCATAACTATACATTTTCTC 1851137 36 100.0 31 .................................... TTATAATGATTAAATTCTAGGCACAACGCCT 1851204 36 100.0 30 .................................... TCAAAATACCCCTTTGCCATATCCTCCCCA 1851270 36 100.0 31 .................................... CAATGTATTGCCCCCCCCCCCGTTAGAATCT 1851337 36 100.0 30 .................................... GTCCCCTGCATATATGCGTGGCGAGTGTAT 1851403 36 100.0 31 .................................... AAAGCACATTCAAAATAATGCGTAAAGAATT 1851470 36 100.0 30 .................................... AGATTCTTTTACCAAAAGATAAATTTGTTG 1851536 36 100.0 31 .................................... TTTGGAAGCGTTGGTAAGCAATAATAATCCT 1851603 36 100.0 30 .................................... TATTTTTGTGCGTGGATTATACTTTAATAT 1851669 36 100.0 31 .................................... TCAATTTAGAGCTTGGCGGAAGCCTATTTGA 1851736 34 86.1 0 ...................--.A.........T.T. | T [1851765] ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.3 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //